Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MM271_RS16285 Genome accession   NZ_CP093300
Coordinates   3287359..3288411 (-) Length   350 a.a.
NCBI ID   WP_026674213.1    Uniprot ID   -
Organism   Alkalihalobacillus sp. LMS39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3282359..3293411
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM271_RS16270 (MM271_16270) - 3284252..3284512 (-) 261 WP_217224945.1 stage V sporulation protein S -
  MM271_RS16275 (MM271_16275) - 3284620..3285414 (-) 795 WP_243528232.1 TIGR00282 family metallophosphoesterase -
  MM271_RS16280 (MM271_16280) rny 3285532..3287100 (-) 1569 WP_243528234.1 ribonuclease Y -
  MM271_RS16285 (MM271_16285) recA 3287359..3288411 (-) 1053 WP_026674213.1 recombinase RecA Machinery gene
  MM271_RS16290 (MM271_16290) - 3288975..3290576 (-) 1602 WP_243528235.1 DEAD/DEAH box helicase -
  MM271_RS16295 (MM271_16295) cinA 3290583..3291824 (-) 1242 WP_243528236.1 competence/damage-inducible protein A Machinery gene
  MM271_RS16300 (MM271_16300) pgsA 3291864..3292445 (-) 582 WP_243528237.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MM271_RS16305 (MM271_16305) - 3292480..3292974 (-) 495 WP_243528240.1 YajQ family cyclic di-GMP-binding protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37792.98 Da        Isoelectric Point: 4.9940

>NTDB_id=663286 MM271_RS16285 WP_026674213.1 3287359..3288411(-) (recA) [Alkalihalobacillus sp. LMS39]
MSDRKAALDMALRQIEKQFGKGSIMKLGEHADQRVSTMSSGALALDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
TQRNGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAISKSKTLAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGSKT
KIKVVKNKVAPPFKTAEVDIMYGEGISREGSILDIGSELDIVQKSGAWYSFNEERLGQGRENAKQFLKENESITETIENQ
IRAHFGLDGEILVEPAGEPEEFTDLLSGKE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=663286 MM271_RS16285 WP_026674213.1 3287359..3288411(-) (recA) [Alkalihalobacillus sp. LMS39]
ATGAGTGATCGCAAAGCCGCATTAGATATGGCACTTCGACAAATAGAAAAGCAATTCGGAAAAGGTTCGATTATGAAGCT
TGGGGAACATGCGGATCAACGTGTTTCTACAATGTCTAGTGGAGCATTAGCTTTAGATATTGCACTAGGTGTTGGTGGAT
ATCCGCGAGGCCGAATTATTGAAGTTTACGGTCCAGAATCATCTGGTAAAACAACAGTTGCGCTTCATGCCATTGCGGAA
ACACAAAGAAACGGTGGTCAAGCGGCTTTTATTGATGCTGAGCATGCACTTGATCCTGTTTATGCACAAAAATTAGGGGT
AAATATTGACGAATTACTTTTATCTCAACCAGATACTGGGGAACAGGCGCTTGAAATCGCAGAAGCATTAGTGCGTAGTG
GAGCAGTCGATATCATTGTCATTGATAGTGTAGCAGCATTAGTGCCAAAAGCTGAGATCGAAGGGGAAATGGGAGATAGT
CATGTAGGTTTACAAGCCCGCTTAATGTCTCAAGCTTTAAGAAAACTTTCAGGTGCAATCAGCAAATCGAAAACATTGGC
CATTTTCATTAACCAAATTCGTGAAAAAGTAGGGGTTATGTTTGGTAATCCTGAAACAACACCAGGTGGTCGTGCTTTAA
AATTCTATTCGTCTGTTCGTTTAGAAGTACGCCGAGCTGAAACACTTAAGCAAGGTAATGATATGGTCGGAAGTAAAACA
AAAATTAAAGTTGTTAAAAATAAAGTCGCGCCTCCGTTTAAAACGGCTGAAGTTGATATTATGTATGGTGAAGGAATTTC
ACGAGAAGGTTCTATTTTAGATATAGGCTCTGAACTTGATATCGTTCAAAAAAGTGGAGCATGGTATTCATTTAATGAAG
AACGATTAGGGCAAGGCCGTGAAAACGCAAAACAGTTTTTAAAAGAAAATGAATCGATCACAGAAACGATTGAAAACCAA
ATTCGAGCACACTTTGGCCTTGATGGTGAAATATTAGTTGAACCTGCTGGTGAACCAGAAGAATTTACTGATTTATTGTC
AGGAAAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.195

93.714

0.817
  recA Latilactobacillus sakei subsp. sakei 23K

73.538

92.857

0.683
  recA Streptococcus mitis NCTC 12261

69.231

96.571

0.669
  recA Streptococcus pneumoniae TIGR4

69.76

95.429

0.666
  recA Streptococcus pneumoniae D39

69.76

95.429

0.666
  recA Streptococcus pneumoniae R6

69.76

95.429

0.666
  recA Streptococcus pneumoniae Rx1

69.76

95.429

0.666
  recA Streptococcus mitis SK321

69.461

95.429

0.663
  recA Streptococcus mutans UA159

69.301

94

0.651
  recA Streptococcus pyogenes NZ131

68.902

93.714

0.646
  recA Lactococcus lactis subsp. cremoris KW2

67.576

94.286

0.637
  recA Neisseria gonorrhoeae MS11

64.264

95.143

0.611
  recA Neisseria gonorrhoeae MS11

64.264

95.143

0.611
  recA Neisseria gonorrhoeae strain FA1090

64.264

95.143

0.611
  recA Vibrio cholerae strain A1552

63.363

95.143

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.363

95.143

0.603
  recA Ralstonia pseudosolanacearum GMI1000

67.093

89.429

0.6
  recA Acinetobacter baylyi ADP1

60.231

99.143

0.597
  recA Acinetobacter baumannii D1279779

61.29

97.429

0.597
  recA Pseudomonas stutzeri DSM 10701

64.087

92.286

0.591
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.818

94.286

0.583
  recA Glaesserella parasuis strain SC1401

63.636

91.143

0.58
  recA Helicobacter pylori 26695

59.238

97.429

0.577
  recA Helicobacter pylori strain NCTC11637

59.238

97.429

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.043

93.143

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.938

92

0.551