Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MM271_RS16295 Genome accession   NZ_CP093300
Coordinates   3290583..3291824 (-) Length   413 a.a.
NCBI ID   WP_243528236.1    Uniprot ID   -
Organism   Alkalihalobacillus sp. LMS39     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3285583..3296824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MM271_RS16285 (MM271_16285) recA 3287359..3288411 (-) 1053 WP_026674213.1 recombinase RecA Machinery gene
  MM271_RS16290 (MM271_16290) - 3288975..3290576 (-) 1602 WP_243528235.1 DEAD/DEAH box helicase -
  MM271_RS16295 (MM271_16295) cinA 3290583..3291824 (-) 1242 WP_243528236.1 competence/damage-inducible protein A Machinery gene
  MM271_RS16300 (MM271_16300) pgsA 3291864..3292445 (-) 582 WP_243528237.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MM271_RS16305 (MM271_16305) - 3292480..3292974 (-) 495 WP_243528240.1 YajQ family cyclic di-GMP-binding protein -
  MM271_RS16310 (MM271_16310) - 3293099..3293998 (-) 900 WP_243528241.1 RodZ domain-containing protein -
  MM271_RS16315 (MM271_16315) - 3294018..3294785 (-) 768 WP_243528242.1 DUF3388 domain-containing protein -
  MM271_RS16320 (MM271_16320) - 3295071..3295325 (-) 255 WP_026674220.1 DUF3243 domain-containing protein -
  MM271_RS16325 (MM271_16325) - 3295416..3296141 (-) 726 WP_243528243.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45849.17 Da        Isoelectric Point: 5.4576

>NTDB_id=663287 MM271_RS16295 WP_243528236.1 3290583..3291824(-) (cinA) [Alkalihalobacillus sp. LMS39]
MNAEIIAVGSELLLGQITNTNATFLSKELADLGINVYYHTVVGDNEKRLLHVIETAQQRSDVIIFTGGLGPTKDDLTKEI
VAKVVKRNLVYDEASLQYIENFFKVRKKTMSENNKKQAIVIEDSVVLENQTGLAPGMAFKADNIHYLLFPGPPNELKPMF
LHAGTNYLMNYIDEIIPIQSRVLRYFGIGESQLESDLVDIIEKQSNPTIAPLAGDGEVTLRLTVKHHDQKMRESMLDEVE
TEINARVGSFFYGYDETSLLQEVVKELIQHSATIACAESLTGGRCSEQLTSLAGASQYYRGGIVSYATDCKKSLLGVSEH
TIQQHGVVSEQVALEMANQIRTMGKANIGISFTGVAGPDKQDGVEVGTVFIGISTETTNNVYPLHLSGTRQQIRNRAVNY
GFYYLLKEMKRWN

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=663287 MM271_RS16295 WP_243528236.1 3290583..3291824(-) (cinA) [Alkalihalobacillus sp. LMS39]
ATGAACGCTGAAATTATTGCTGTTGGTTCAGAGTTATTACTTGGTCAAATCACAAATACAAACGCCACGTTCCTATCGAA
GGAACTTGCGGATTTAGGAATTAATGTCTATTATCATACGGTTGTTGGAGATAATGAAAAAAGACTGCTTCATGTTATTG
AAACAGCTCAACAGCGGTCAGATGTCATTATTTTCACTGGTGGTTTAGGTCCAACAAAAGATGATTTAACAAAAGAAATC
GTCGCTAAAGTAGTGAAAAGAAATTTAGTATATGATGAAGCTTCCCTTCAATATATTGAAAATTTCTTTAAGGTCAGAAA
AAAAACAATGTCCGAAAATAATAAAAAACAAGCGATTGTTATTGAAGATTCCGTCGTGCTTGAAAATCAAACAGGGCTAG
CTCCTGGAATGGCTTTTAAAGCCGACAATATTCATTATCTGTTATTTCCAGGCCCGCCAAACGAATTAAAACCAATGTTT
TTACATGCGGGAACGAATTACCTAATGAACTATATTGACGAAATCATCCCGATTCAATCGCGTGTCCTTCGATATTTTGG
CATTGGGGAATCTCAGTTAGAATCAGACTTAGTTGATATTATTGAGAAACAGTCTAATCCAACGATTGCTCCTTTAGCTG
GAGACGGTGAAGTGACATTACGGTTAACCGTAAAGCATCATGACCAAAAAATGAGAGAATCAATGCTTGATGAAGTAGAA
ACTGAAATCAATGCTAGAGTTGGCTCCTTTTTTTATGGGTATGATGAAACGTCATTACTGCAAGAAGTTGTGAAAGAACT
AATACAGCATTCAGCAACAATAGCTTGTGCTGAAAGCTTAACCGGTGGACGGTGCAGTGAACAATTAACATCTTTAGCTG
GGGCATCTCAATATTACCGTGGAGGCATTGTAAGTTATGCAACAGACTGTAAAAAAAGTCTACTTGGAGTTTCAGAACAT
ACGATACAACAGCATGGTGTTGTTAGTGAACAAGTAGCGTTAGAAATGGCAAATCAAATTAGAACAATGGGCAAAGCAAA
TATAGGAATCAGCTTCACAGGGGTAGCTGGTCCAGACAAACAAGATGGTGTAGAAGTAGGAACCGTTTTTATTGGTATTT
CAACTGAGACAACTAATAATGTTTATCCTTTGCATTTGTCCGGCACTCGCCAACAAATAAGAAATCGAGCTGTGAACTAT
GGTTTTTATTATTTGTTGAAAGAAATGAAAAGGTGGAATTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-162)

Competence-damaged protein (CinA)

(257-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

55.062

98.063

0.54
  cinA Streptococcus mutans UA159

45.946

98.547

0.453
  cinA Streptococcus pneumoniae TIGR4

44.63

100

0.453
  cinA Streptococcus pneumoniae Rx1

44.391

100

0.45
  cinA Streptococcus pneumoniae R6

44.391

100

0.45
  cinA Streptococcus mitis SK321

44.153

100

0.448
  cinA Streptococcus pneumoniae D39

44.153

100

0.448
  cinA Streptococcus mitis NCTC 12261

44.153

100

0.448
  cinA Streptococcus suis isolate S10

38.81

100

0.395