Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MN093_RS00955 Genome accession   NZ_CP093291
Coordinates   199054..199479 (-) Length   141 a.a.
NCBI ID   WP_002088046.1    Uniprot ID   -
Organism   Bacillus mycoides strain DSM 2048     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 194054..204479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN093_RS00935 (MN093_00935) - 194641..195564 (-) 924 WP_060751723.1 dipeptidase -
  MN093_RS00940 (MN093_00940) spoVS 195624..195884 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  MN093_RS00945 (MN093_00945) - 196034..196828 (-) 795 WP_002014601.1 TIGR00282 family metallophosphoesterase -
  MN093_RS00950 (MN093_00950) rny 197008..198570 (-) 1563 WP_002111330.1 ribonuclease Y -
  MN093_RS00955 (MN093_00955) recA 199054..199479 (-) 426 WP_002088046.1 recombinase RecA Machinery gene
  MN093_RS00960 (MN093_00960) - 199746..200369 (-) 624 WP_088034594.1 topoisomerase I -
  MN093_RS00965 (MN093_00965) recA 200467..201075 (-) 609 Protein_192 recombinase RecA -
  MN093_RS00970 (MN093_00970) cinA 201218..202456 (-) 1239 WP_241875720.1 competence/damage-inducible protein A Machinery gene
  MN093_RS00975 (MN093_00975) pgsA 202477..203055 (-) 579 WP_002014596.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MN093_RS00980 (MN093_00980) - 203119..204030 (-) 912 WP_131246429.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 16005.84 Da        Isoelectric Point: 4.9286

>NTDB_id=663098 MN093_RS00955 WP_002088046.1 199054..199479(-) (recA) [Bacillus mycoides strain DSM 2048]
MPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKIKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIV
QKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFVREHHGIGENSGVEDTEDSTRQD

Nucleotide


Download         Length: 426 bp        

>NTDB_id=663098 MN093_RS00955 WP_002088046.1 199054..199479(-) (recA) [Bacillus mycoides strain DSM 2048]
GTGCCAGAAACAACTCCAGGTGGTCGTGCGTTGAAATTCTATTCAACTGTCCGTCTTGAAGTACGTCGTGCTGAGCAGTT
AAAGCAAGGTAACGATATTGTTGGTAATAAAACGAAAATAAAAGTAGTTAAAAATAAAGTAGCACCGCCATTCCGTGTTG
CTGAAGTTGATATTATGTACGGAGAAGGTATTTCAAGAGAAGGTGAAATCTTAGATATGGCTTCTGAACTTGATATCGTT
CAAAAGAGCGGTGCTTGGTACTCTTATAATGAAGAACGCTTAGGACAAGGTCGTGAAAATTCGAAGCAATTCTTAAAAGA
GAATACGGATTTAAGAGAGGAAATTGCCTTCTTTGTTCGTGAACATCACGGAATTGGTGAAAACTCTGGTGTTGAAGACA
CGGAAGATTCAACTCGTCAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(2-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

80

92.199

0.738
  recA Latilactobacillus sakei subsp. sakei 23K

66.667

89.362

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.741

95.745

0.582
  recA Streptococcus pneumoniae TIGR4

57.447

100

0.574
  recA Streptococcus pneumoniae Rx1

57.447

100

0.574
  recA Streptococcus pneumoniae D39

57.447

100

0.574
  recA Streptococcus pneumoniae R6

57.447

100

0.574
  recA Streptococcus mutans UA159

56.429

99.291

0.56
  recA Ralstonia pseudosolanacearum GMI1000

62.903

87.943

0.553
  recA Streptococcus pyogenes NZ131

61.417

90.071

0.553
  recA Helicobacter pylori 26695

60.63

90.071

0.546
  recA Helicobacter pylori strain NCTC11637

60.63

90.071

0.546
  recA Streptococcus mitis SK321

59.375

90.78

0.539
  recA Streptococcus mitis NCTC 12261

59.375

90.78

0.539
  recA Lactococcus lactis subsp. cremoris KW2

56.716

95.035

0.539
  recA Neisseria gonorrhoeae MS11

54.745

97.163

0.532
  recA Neisseria gonorrhoeae MS11

54.745

97.163

0.532
  recA Neisseria gonorrhoeae strain FA1090

54.745

97.163

0.532
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56

88.652

0.496
  recA Acinetobacter baumannii D1279779

49.286

99.291

0.489
  recA Glaesserella parasuis strain SC1401

49.624

94.326

0.468
  recA Acinetobacter baylyi ADP1

52.893

85.816

0.454
  recA Vibrio cholerae O1 biovar El Tor strain E7946

52.5

85.106

0.447
  recA Vibrio cholerae strain A1552

52.5

85.106

0.447
  recA Pseudomonas stutzeri DSM 10701

54.386

80.851

0.44
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.696

81.56

0.397