Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MN093_RS00970 Genome accession   NZ_CP093291
Coordinates   201218..202456 (-) Length   412 a.a.
NCBI ID   WP_241875720.1    Uniprot ID   -
Organism   Bacillus mycoides strain DSM 2048     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 196218..207456
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MN093_RS00950 (MN093_00950) rny 197008..198570 (-) 1563 WP_002111330.1 ribonuclease Y -
  MN093_RS00955 (MN093_00955) recA 199054..199479 (-) 426 WP_002088046.1 recombinase RecA Machinery gene
  MN093_RS00960 (MN093_00960) - 199746..200369 (-) 624 WP_088034594.1 topoisomerase I -
  MN093_RS00965 (MN093_00965) recA 200467..201075 (-) 609 Protein_192 recombinase RecA -
  MN093_RS00970 (MN093_00970) cinA 201218..202456 (-) 1239 WP_241875720.1 competence/damage-inducible protein A Machinery gene
  MN093_RS00975 (MN093_00975) pgsA 202477..203055 (-) 579 WP_002014596.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MN093_RS00980 (MN093_00980) - 203119..204030 (-) 912 WP_131246429.1 helix-turn-helix domain-containing protein -
  MN093_RS00985 (MN093_00985) - 204052..204837 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  MN093_RS00990 (MN093_00990) - 204977..205225 (-) 249 WP_000114449.1 DUF3243 domain-containing protein -
  MN093_RS00995 (MN093_00995) ymfI 205302..206015 (-) 714 WP_002014593.1 elongation factor P 5-aminopentanone reductase -
  MN093_RS01000 (MN093_01000) yfmH 206133..207419 (-) 1287 WP_002014592.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45651.07 Da        Isoelectric Point: 5.3492

>NTDB_id=663099 MN093_RS00970 WP_241875720.1 201218..202456(-) (cinA) [Bacillus mycoides strain DSM 2048]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIELAEERADMLIFTGGLGPTKDDLTKET
IASSLDEELVYDEKALTSISDYFKRTGREFTENNKKQALVLNGSTVFANDHGMAPGMGLNTNRKVYILLPGPPKEMKPMY
ISYVEPFLCKFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHHDADEAEKLIQHVED
LILERVGEFFYGYDQDFLHYKAIRLLKKKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYQNDVKQQILHVPEEV
LRTDGAVSKQCARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFIGLVIKDEPAVVFSLNLSGSRQQIRERSTKY
GFYHLFKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=663099 MN093_RS00970 WP_241875720.1 201218..202456(-) (cinA) [Bacillus mycoides strain DSM 2048]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTACCATACTGTTGTTGGGGATAATAACAAGCGATTACAGAAGGCAATTG
AATTGGCTGAAGAACGAGCTGATATGCTCATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACA
ATAGCGTCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAACATCGATAAGCGATTATTTTAAGCGCACAGG
CCGTGAATTTACGGAGAATAATAAAAAGCAGGCGCTCGTTTTAAATGGATCGACTGTATTTGCGAATGATCACGGTATGG
CGCCTGGTATGGGATTAAATACGAACAGAAAAGTTTATATTTTATTACCAGGACCACCAAAAGAAATGAAGCCGATGTAT
ATAAGTTACGTAGAGCCTTTTTTATGTAAGTTTACAACGGGGGAAAATATTTATTCTCGTGTTCTTCGTTTTTTTGGTAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCAACCATTGCACCACTTGCAAATG
ATGGAGAAGTGACATTACGTTTAACTGCCAAACATCATGATGCTGATGAGGCGGAGAAACTGATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGATTTCCTTCATTACAAGGCAATAAGGCTATTGAA
GAAAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACAGAAAATGCTGGTG
TTTCGTCTGTATTTAAAGGCGGTGTCATTTGTTATCAAAATGATGTGAAGCAACAAATTTTACATGTACCTGAAGAAGTG
TTACGTACTGATGGCGCGGTTAGTAAACAGTGTGCTCGCTATCTTGCTGAAAATGTAAAGGAACTGTTAAAAGCAGATAT
CGGAATTAGTTTCACTGGGGTGGCAGGACCGGATGCTTCAGAGCATAAAGAACCAGGAACAGTATTTATTGGATTGGTGA
TTAAAGATGAACCAGCTGTAGTCTTCTCGCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGCTCTACAAAATAT
GGATTTTATCATTTATTTAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(259-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

46.062

100

0.468
  cinA Streptococcus pneumoniae TIGR4

45.823

100

0.466
  cinA Streptococcus pneumoniae Rx1

45.346

100

0.461
  cinA Streptococcus pneumoniae R6

45.346

100

0.461
  cinA Streptococcus mitis NCTC 12261

45.107

100

0.459
  cinA Streptococcus pneumoniae D39

45.107

100

0.459
  cinA Streptococcus mutans UA159

46.059

98.544

0.454
  cinA Streptococcus suis isolate S10

40.849

91.505

0.374