Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ML603_RS09495 Genome accession   NZ_CP092887
Coordinates   1926527..1927663 (-) Length   378 a.a.
NCBI ID   WP_241067222.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain Karl     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1921527..1932663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ML603_RS09470 (ML603_09470) - 1922824..1924386 (-) 1563 WP_241067221.1 DUF2079 domain-containing protein -
  ML603_RS09475 (ML603_09475) - 1924721..1925026 (-) 306 WP_143928077.1 DUF1292 domain-containing protein -
  ML603_RS09480 (ML603_09480) ruvX 1925037..1925456 (-) 420 WP_003053103.1 Holliday junction resolvase RuvX -
  ML603_RS09485 (ML603_09485) - 1925453..1925722 (-) 270 WP_003045720.1 IreB family regulatory phosphoprotein -
  ML603_RS09490 (ML603_09490) spx 1925834..1926232 (-) 399 WP_003053105.1 transcriptional regulator Spx -
  ML603_RS09495 (ML603_09495) recA 1926527..1927663 (-) 1137 WP_241067222.1 recombinase RecA Machinery gene
  ML603_RS09500 (ML603_09500) cinA 1927768..1929039 (-) 1272 WP_241067223.1 competence/damage-inducible protein A Machinery gene
  ML603_RS09505 (ML603_09505) - 1929163..1929516 (-) 354 WP_241067224.1 VOC family protein -
  ML603_RS09510 (ML603_09510) - 1929519..1930091 (-) 573 WP_138126794.1 DNA-3-methyladenine glycosylase I -
  ML603_RS09515 (ML603_09515) ruvA 1930101..1930694 (-) 594 WP_143928080.1 Holliday junction branch migration protein RuvA -
  ML603_RS09520 (ML603_09520) - 1930696..1931916 (-) 1221 WP_143928081.1 MFS transporter -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40700.34 Da        Isoelectric Point: 4.8451

>NTDB_id=660953 ML603_RS09495 WP_241067222.1 1926527..1927663(-) (recA) [Streptococcus dysgalactiae subsp. equisimilis strain Karl]
MAKKLKKNEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
TTQIKGTGDQKDSSIGKETRIKVVKNKVAPPFKVAEVEIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSE
NAKRYLADHPELFDEIDRKVRVKFGLLEESEEESAMAVVAEETDDLVLDLDNGIEIED

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=660953 ML603_RS09495 WP_241067222.1 1926527..1927663(-) (recA) [Streptococcus dysgalactiae subsp. equisimilis strain Karl]
TTGGCAAAAAAATTGAAAAAAAATGAAGAAATCACTAAAAAATTTGGTGATGAGCGTCGTAAGGCACTTGATGATGCCCT
AAAAAATATTGAAAAAGATTTTGGTAAGGGTGCAGTGATGCGCTTGGGAGAACGTGCAGAGCAAAAAGTTCAGGTTATGA
GTTCAGGAAGTCTAGCTCTTGATATTGCGCTTGGAGCAGGTGGTTATCCTAAAGGACGTATCATTGAGATCTATGGTCCA
GAATCTTCTGGTAAAACAACTGTGGCTTTACATGCTGTGGCACAAGCTCAAAAAGAAGGTGGAATCGCAGCCTTTATCGA
TGCCGAGCATGCGCTTGATCCAGCTTACGCTGCTGCGCTTGGGGTTAATATTGATGAACTCCTCTTGTCTCAACCAGATT
CTGGAGAACAAGGACTTGAAATTGCAGGTAAATTGATTGATTCTGGTGCGGTTGACTTGGTTGTTGTCGATTCAGTAGCA
GCTTTAGTGCCACGTGCTGAAATTGATGGTGATATTGGCGATAGCCATGTCGGATTGCAAGCACGTATGATGAGTCAGGC
GATGCGTAAGCTATCAGCTTCTATTAACAAAACAAAAACTATCGCTATCTTTATTAACCAATTGCGTGAAAAAGTTGGTG
TGATGTTTGGAAATCCTGAAACAACACCGGGTGGTCGTGCCTTGAAATTCTATGCTTCTGTTCGTTTAGATGTGCGTGGA
ACCACTCAAATTAAAGGAACTGGTGACCAAAAAGACAGTAGTATTGGTAAAGAAACAAGAATCAAAGTTGTTAAAAATAA
GGTGGCTCCTCCGTTTAAAGTGGCAGAGGTTGAAATCATGTATGGAGAAGGCATTTCCCGTACTGGAGAGCTTGTGAAAA
TTGCTTCTGATTTGGACATTATCCAAAAAGCAGGTGCTTGGTTCTCTTATAATGGTGAGAAAATTGGTCAAGGTTCTGAA
AATGCTAAGCGTTATTTGGCGGATCATCCAGAATTATTTGATGAGATTGATCGTAAAGTACGTGTTAAATTTGGTTTGCT
TGAAGAAAGCGAAGAAGAATCTGCTATGGCAGTGGTGGCAGAAGAAACCGATGATCTTGTTTTAGATTTAGATAACGGGA
TTGAAATTGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus pyogenes NZ131

98.413

100

0.984
  recA Streptococcus mutans UA159

87.728

100

0.889
  recA Streptococcus mitis NCTC 12261

85.34

100

0.862
  recA Streptococcus pneumoniae R6

84.416

100

0.86
  recA Streptococcus pneumoniae TIGR4

84.416

100

0.86
  recA Streptococcus pneumoniae Rx1

84.416

100

0.86
  recA Streptococcus pneumoniae D39

84.416

100

0.86
  recA Streptococcus mitis SK321

85.302

100

0.86
  recA Lactococcus lactis subsp. cremoris KW2

78.47

93.386

0.733
  recA Latilactobacillus sakei subsp. sakei 23K

70.92

89.153

0.632
  recA Bacillus subtilis subsp. subtilis str. 168

67.781

87.037

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.018

89.153

0.553
  recA Acinetobacter baumannii D1279779

58.924

93.386

0.55
  recA Acinetobacter baylyi ADP1

59.259

92.857

0.55
  recA Neisseria gonorrhoeae strain FA1090

60.641

90.741

0.55
  recA Neisseria gonorrhoeae MS11

60.641

90.741

0.55
  recA Neisseria gonorrhoeae MS11

60.641

90.741

0.55
  recA Glaesserella parasuis strain SC1401

56.868

96.296

0.548
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.539

85.45

0.534
  recA Vibrio cholerae strain A1552

61.538

85.979

0.529
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

85.979

0.529
  recA Pseudomonas stutzeri DSM 10701

57.184

92.063

0.526
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.912

87.566

0.516
  recA Helicobacter pylori strain NCTC11637

57.784

88.36

0.511
  recA Helicobacter pylori 26695

57.784

88.36

0.511
  recA Ralstonia pseudosolanacearum GMI1000

57.831

87.831

0.508