Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   MLD62_RS19395 Genome accession   NZ_CP092833
Coordinates   3816768..3817193 (-) Length   141 a.a.
NCBI ID   WP_002111333.1    Uniprot ID   A0A1W6ABW2
Organism   Bacillus mycoides strain LX30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 3811768..3822193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLD62_RS19375 - 3812352..3813275 (-) 924 WP_002128703.1 dipeptidase -
  MLD62_RS19380 spoVS 3813335..3813595 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  MLD62_RS19385 - 3813745..3814539 (-) 795 WP_002014601.1 TIGR00282 family metallophosphoesterase -
  MLD62_RS19390 rny 3814719..3816284 (-) 1566 WP_002014600.1 ribonuclease Y -
  MLD62_RS19395 recA 3816768..3817193 (-) 426 WP_002111333.1 recombinase RecA Machinery gene
  MLD62_RS19400 - 3817459..3818082 (-) 624 WP_214932583.1 topoisomerase I -
  MLD62_RS19405 recA 3818180..3818788 (-) 609 Protein_3774 recombinase RecA -
  MLD62_RS19410 cinA 3818932..3820170 (-) 1239 WP_241138577.1 competence/damage-inducible protein A Machinery gene
  MLD62_RS19415 pgsA 3820191..3820769 (-) 579 WP_002014596.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MLD62_RS19420 - 3820833..3821744 (-) 912 WP_002142844.1 helix-turn-helix domain-containing protein -

Sequence


Protein


Download         Length: 141 a.a.        Molecular weight: 15991.81 Da        Isoelectric Point: 4.9286

>NTDB_id=660717 MLD62_RS19395 WP_002111333.1 3816768..3817193(-) (recA) [Bacillus mycoides strain LX30]
MPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKTKVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIV
QKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFFVREHHGIGENSGVEDTEDSTRQD

Nucleotide


Download         Length: 426 bp        

>NTDB_id=660717 MLD62_RS19395 WP_002111333.1 3816768..3817193(-) (recA) [Bacillus mycoides strain LX30]
GTGCCAGAAACAACTCCAGGTGGTCGTGCGTTGAAATTCTATTCAACTGTCCGTCTTGAAGTACGTCGTGCTGAGCAGTT
AAAGCAAGGTAACGATATTGTTGGTAATAAAACGAAAGTAAAAGTAGTTAAAAATAAAGTAGCACCGCCATTCCGTGTTG
CTGAAGTTGATATTATGTACGGAGAAGGTATTTCAAGAGAAGGTGAAATCTTAGATATGGCTTCTGAACTTGATATCGTT
CAAAAGAGCGGTGCTTGGTACTCTTATAATGAAGAACGCTTAGGACAAGGTCGTGAAAATTCGAAGCAATTCTTAAAAGA
GAATACGGATTTAAGAGAGGAAATTGCCTTCTTTGTTCGTGAACATCACGGAATTGGTGAAAACTCTGGTGTTGAAGACA
CGGAAGATTCAACTCGTCAAGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A1W6ABW2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

79.231

92.199

0.73

  recA Latilactobacillus sakei subsp. sakei 23K

65.873

89.362

0.589

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.481

95.745

0.589

  recA Streptococcus pneumoniae TIGR4

56.738

100

0.567

  recA Streptococcus pneumoniae Rx1

56.738

100

0.567

  recA Streptococcus pneumoniae D39

56.738

100

0.567

  recA Streptococcus pneumoniae R6

56.738

100

0.567

  recA Ralstonia pseudosolanacearum GMI1000

63.71

87.943

0.56

  recA Streptococcus mutans UA159

55.714

99.291

0.553

  recA Helicobacter pylori 26695

60.63

90.071

0.546

  recA Helicobacter pylori strain NCTC11637

60.63

90.071

0.546

  recA Streptococcus pyogenes NZ131

60.63

90.071

0.546

  recA Neisseria gonorrhoeae MS11

55.474

97.163

0.539

  recA Neisseria gonorrhoeae MS11

55.474

97.163

0.539

  recA Neisseria gonorrhoeae strain FA1090

55.474

97.163

0.539

  recA Streptococcus mitis NCTC 12261

58.594

90.78

0.532

  recA Streptococcus mitis SK321

58.594

90.78

0.532

  recA Lactococcus lactis subsp. cremoris KW2

55.97

95.035

0.532

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

56.8

88.652

0.504

  recA Acinetobacter baumannii D1279779

50

99.291

0.496

  recA Glaesserella parasuis strain SC1401

50.376

94.326

0.475

  recA Acinetobacter baylyi ADP1

53.719

85.816

0.461

  recA Pseudomonas stutzeri DSM 10701

55.263

80.851

0.447

  recA Vibrio cholerae O1 biovar El Tor strain E7946

51.667

85.106

0.44

  recA Vibrio cholerae strain A1552

51.667

85.106

0.44

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

47.826

81.56

0.39