Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MLD62_RS19410 Genome accession   NZ_CP092833
Coordinates   3818932..3820170 (-) Length   412 a.a.
NCBI ID   WP_241138577.1    Uniprot ID   -
Organism   Bacillus mycoides strain LX30     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3813932..3825170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MLD62_RS19390 rny 3814719..3816284 (-) 1566 WP_002014600.1 ribonuclease Y -
  MLD62_RS19395 recA 3816768..3817193 (-) 426 WP_002111333.1 recombinase RecA Machinery gene
  MLD62_RS19400 - 3817459..3818082 (-) 624 WP_214932583.1 topoisomerase I -
  MLD62_RS19405 recA 3818180..3818788 (-) 609 Protein_3774 recombinase RecA -
  MLD62_RS19410 cinA 3818932..3820170 (-) 1239 WP_241138577.1 competence/damage-inducible protein A Machinery gene
  MLD62_RS19415 pgsA 3820191..3820769 (-) 579 WP_002014596.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MLD62_RS19420 - 3820833..3821744 (-) 912 WP_002142844.1 helix-turn-helix domain-containing protein -
  MLD62_RS19425 - 3821766..3822551 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  MLD62_RS19430 - 3822690..3822938 (-) 249 WP_000114449.1 DUF3243 domain-containing protein -
  MLD62_RS19435 - 3823015..3823728 (-) 714 WP_214932579.1 SDR family oxidoreductase -
  MLD62_RS19440 - 3823846..3825132 (-) 1287 WP_002014592.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45565.87 Da        Isoelectric Point: 5.0243

>NTDB_id=660718 MLD62_RS19410 WP_241138577.1 3818932..3820170(-) (cinA) [Bacillus mycoides strain LX30]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIELAEERADMLIFTGGLGPTKDDLTKET
IASSLDEELVYDEKALTSISDYFKRTGREFTDNNKKQALVLNGSTVFANDHGMAPGMGLNTNGKVYILLPGPPKEMKPMY
ISYVEPFLCKFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHHDADEAEKLIQHVED
LILERVGEFFYGYDQDFLHYKAIRLLKEKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYQNDVKQQILHVPEEV
LRTDGAVNKQCARYLAENVKELLKADIGISFTGVAGPDASEHKEPGTVFIGLVIKDEPAVVFSLNLSGSRQQIRERSTKY
GFYHLFKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=660718 MLD62_RS19410 WP_241138577.1 3818932..3820170(-) (cinA) [Bacillus mycoides strain LX30]
ATGAATGCTGAAATTATTGCGGTTGGAACGGAATTATTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATCGGAATTAACGTGTACTACCATACTGTTGTTGGGGATAATAACAAGCGATTACAGAAGGCAATTG
AATTGGCTGAAGAACGAGCTGATATGCTCATTTTTACAGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACA
ATAGCGTCTAGTTTAGATGAAGAGCTTGTGTATGATGAAAAGGCATTAACATCGATAAGCGATTATTTTAAGCGTACAGG
CCGTGAATTTACGGATAATAATAAAAAGCAGGCGCTCGTTTTAAATGGATCGACTGTATTTGCGAATGATCACGGTATGG
CGCCTGGTATGGGATTAAATACGAACGGAAAAGTTTATATTTTATTACCAGGACCACCAAAAGAAATGAAGCCGATGTAT
ATAAGTTACGTAGAGCCTTTTTTATGTAAGTTTACAACGGGGGAAAATATTTATTCTCGTGTTCTTCGTTTTTTTGGTAT
TGGGGAATCTCAATTAGAGGTGAAAGTTCAAGATTTAATTGATGGACAAACGAACCCAACCATTGCACCACTTGCAAATG
ATGGAGAAGTGACATTACGTTTAACTGCCAAACATCATGATGCTGATGAGGCGGAGAAACTGATTCAGCATGTGGAAGAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTACGGATATGACCAAGATTTCCTTCATTACAAGGCAATAAGGCTATTGAA
GGAAAAAGGGTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGTGGTCTTTTTGGAAATCAAGTAACAGAAAATGCTGGTG
TTTCGTCTGTATTTAAAGGCGGTGTCATTTGTTATCAAAATGATGTGAAGCAACAAATTTTACATGTACCTGAAGAAGTG
TTACGTACTGATGGCGCGGTTAATAAACAGTGTGCTCGCTATCTTGCTGAAAATGTAAAGGAACTGTTAAAAGCAGATAT
CGGAATTAGTTTCACTGGGGTGGCAGGACCGGATGCTTCAGAGCATAAAGAACCAGGAACCGTATTTATTGGATTGGTGA
TTAAAGATGAACCAGCTGTAGTCTTCTCGCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAACGCTCTACAAAATAT
GGATTTTATCATTTATTTAAAAAGCTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.981

100

0.59
  cinA Streptococcus mitis SK321

45.823

100

0.466
  cinA Streptococcus pneumoniae TIGR4

45.823

100

0.466
  cinA Streptococcus pneumoniae Rx1

45.346

100

0.461
  cinA Streptococcus pneumoniae R6

45.346

100

0.461
  cinA Streptococcus mitis NCTC 12261

45.107

100

0.459
  cinA Streptococcus pneumoniae D39

45.107

100

0.459
  cinA Streptococcus mutans UA159

46.305

98.544

0.456
  cinA Streptococcus suis isolate S10

41.489

91.262

0.379