Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MK860_RS08350 Genome accession   NZ_CP092829
Coordinates   1694660..1695697 (+) Length   345 a.a.
NCBI ID   WP_044141863.1    Uniprot ID   A0AB34QUC5
Organism   Bacillus pumilus strain MS32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1689660..1700697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK860_RS08325 (MK860_08305) - 1690443..1690700 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  MK860_RS08330 (MK860_08310) - 1690832..1691623 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  MK860_RS08335 (MK860_08315) - 1691647..1692558 (+) 912 WP_003212257.1 helix-turn-helix domain-containing protein -
  MK860_RS08340 (MK860_08320) pgsA 1692634..1693215 (+) 582 WP_044141864.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MK860_RS08345 (MK860_08325) cinA 1693232..1694482 (+) 1251 WP_065097419.1 competence/damage-inducible protein A Machinery gene
  MK860_RS08350 (MK860_08330) recA 1694660..1695697 (+) 1038 WP_044141863.1 recombinase RecA Machinery gene
  MK860_RS08355 (MK860_08335) rny 1696199..1697761 (+) 1563 WP_003211958.1 ribonuclease Y -
  MK860_RS08360 (MK860_08340) - 1697850..1698644 (+) 795 WP_003212177.1 TIGR00282 family metallophosphoesterase -
  MK860_RS08365 (MK860_08345) spoVS 1698846..1699106 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37587.81 Da        Isoelectric Point: 4.9077

>NTDB_id=660594 MK860_RS08350 WP_044141863.1 1694660..1695697(+) (recA) [Bacillus pumilus strain MS32]
MSDRQAALDMALKQIEKQFGKGSIMKLGERTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT
RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDILLMIQEQ
IREHYGLDTNGVKAAEEEGQEELEI

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=660594 MK860_RS08350 WP_044141863.1 1694660..1695697(+) (recA) [Bacillus pumilus strain MS32]
ATGAGTGATCGTCAAGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTTGGTAAAGGCTCTATTATGAAACT
AGGAGAGCGAACAGATACACGTATTTCAACAGTACCGAGTGGTTCGTTAGCACTTGATACTGCACTAGGAATAGGTGGAT
ATCCTCGCGGCCGTATTATTGAAGTATATGGTCCAGAGAGTTCTGGTAAAACGACAGTAGCACTTCATGCCATTGCTGAG
GTTCAGCAGCAGGGAGGACAAGCTGCATTTATTGATGCAGAGCATGCGCTCGATCCAGTCTACGCTCAAAAACTAGGTGT
CAATATTGATGAGCTGTTACTTTCTCAGCCTGATACAGGAGAACAAGCACTTGAAATTGCAGAAGCTCTTGTCCGCAGCG
GGGCAGTTGATATTGTTGTTATTGACTCAGTAGCTGCTCTTGTACCAAAAGCAGAGATTGAAGGAGACATGGGTGATTCG
CACGTTGGCCTACAAGCACGCTTGATGTCCCAAGCACTTCGTAAACTATCTGGTGCCATTAATAAATCAAAAACCATTGC
CATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTCATGTTCGGTAACCCTGAAACAACGCCAGGTGGACGTGCGCTGA
AGTTCTATTCATCTGTTCGTTTAGAAGTGCGCCGTGCTGAACAGCTGAAGCAGGGCAATGACATTATGGGGAATAAAACG
AGAATTAAAGTGGTGAAAAACAAAGTAGCACCGCCATTCCGTATTGCAGAAGTAGACATTATGTACGGTGAAGGAATCTC
AAAAGAGGGCGAAATCATCGACCTTGGAAGCGAATTAGATATCGTACAAAAGAGCGGTGCTTGGTATTCTTATCAAGAGG
AACGTCTTGGACAAGGCCGCGAAAATGCGAAACAGTTCCTTAAAGAAAACAAAGATATTCTTCTCATGATTCAAGAACAA
ATTAGAGAGCACTACGGTTTGGATACAAACGGAGTGAAAGCAGCTGAAGAAGAAGGTCAAGAGGAATTGGAAATTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.687

96.232

0.93
  recA Latilactobacillus sakei subsp. sakei 23K

75.077

94.203

0.707
  recA Streptococcus mitis SK321

67.733

99.71

0.675
  recA Streptococcus mitis NCTC 12261

66.954

100

0.675
  recA Streptococcus pneumoniae D39

69.394

95.652

0.664
  recA Streptococcus pneumoniae Rx1

69.394

95.652

0.664
  recA Streptococcus pneumoniae R6

69.394

95.652

0.664
  recA Streptococcus pneumoniae TIGR4

69.394

95.652

0.664
  recA Streptococcus mutans UA159

68.997

95.362

0.658
  recA Streptococcus pyogenes NZ131

68.293

95.072

0.649
  recA Lactococcus lactis subsp. cremoris KW2

66.364

95.652

0.635
  recA Neisseria gonorrhoeae MS11

63.205

97.681

0.617
  recA Neisseria gonorrhoeae MS11

63.205

97.681

0.617
  recA Neisseria gonorrhoeae strain FA1090

63.205

97.681

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.059

98.551

0.612
  recA Ralstonia pseudosolanacearum GMI1000

64.329

95.072

0.612
  recA Helicobacter pylori strain NCTC11637

64.615

94.203

0.609
  recA Helicobacter pylori 26695

64.615

94.203

0.609
  recA Glaesserella parasuis strain SC1401

60.933

99.42

0.606
  recA Acinetobacter baumannii D1279779

61.111

99.13

0.606
  recA Acinetobacter baylyi ADP1

60.641

99.42

0.603
  recA Vibrio cholerae strain A1552

64.174

93.043

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

93.043

0.597
  recA Pseudomonas stutzeri DSM 10701

61.446

96.232

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.783

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.062

93.623

0.562