Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MK860_RS08345 Genome accession   NZ_CP092829
Coordinates   1693232..1694482 (+) Length   416 a.a.
NCBI ID   WP_065097419.1    Uniprot ID   -
Organism   Bacillus pumilus strain MS32     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1688232..1699482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK860_RS08320 (MK860_08300) - 1689641..1690369 (+) 729 WP_106065307.1 SDR family oxidoreductase -
  MK860_RS08325 (MK860_08305) - 1690443..1690700 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  MK860_RS08330 (MK860_08310) - 1690832..1691623 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  MK860_RS08335 (MK860_08315) - 1691647..1692558 (+) 912 WP_003212257.1 helix-turn-helix domain-containing protein -
  MK860_RS08340 (MK860_08320) pgsA 1692634..1693215 (+) 582 WP_044141864.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MK860_RS08345 (MK860_08325) cinA 1693232..1694482 (+) 1251 WP_065097419.1 competence/damage-inducible protein A Machinery gene
  MK860_RS08350 (MK860_08330) recA 1694660..1695697 (+) 1038 WP_044141863.1 recombinase RecA Machinery gene
  MK860_RS08355 (MK860_08335) rny 1696199..1697761 (+) 1563 WP_003211958.1 ribonuclease Y -
  MK860_RS08360 (MK860_08340) - 1697850..1698644 (+) 795 WP_003212177.1 TIGR00282 family metallophosphoesterase -
  MK860_RS08365 (MK860_08345) spoVS 1698846..1699106 (+) 261 WP_029281188.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45735.80 Da        Isoelectric Point: 4.9261

>NTDB_id=660593 MK860_RS08345 WP_065097419.1 1693232..1694482(+) (cinA) [Bacillus pumilus strain MS32]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEDDTFYMLLPGPPSEL
HPMFENEAKSLISEKLDLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEVKILARVGEYFYGYGDTSLVREASKSLHEHGKTVAAAESLTGGMFSEWLTDLEGASSILSGSIVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGARKLTGSDIGISFTGVAGPDTHEGQPVGKVFIGLSTKDHTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=660593 MK860_RS08345 WP_065097419.1 1693232..1694482(+) (cinA) [Bacillus pumilus strain MS32]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAGCTAGCTGAAATTGGTGTGAATGTGTATTACCATACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGGGCCATTCAAGTGGCGCAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACGAAAGATGATTTA
ACAAAAGAAACCATCGCGAGTACACTTGGAAAAGAGCTCGTGCTAAATGAAGAAGCATTTGAATCCATTCAAGAATACTT
TCGAAAGACTGGACGAGACATGTCACCGAATAACCGGAAGCAGGCACTCGTTCTAGAAGGATCTGATGTGCTCGTGAACC
GGTTTGGGATGGCCCCAGGTATGTTTATTCAAGAAGACGATACGTTTTATATGCTACTTCCTGGACCACCAAGTGAACTG
CATCCAATGTTTGAGAACGAGGCGAAGTCGCTGATATCTGAGAAACTGGACTTAAAGGAAAAAATCGTGTCTGTTGTTCT
TCGCTTTTTCGGAATCGGCGAATCACAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAACCCAACGATTG
CACCTCTCGCATCTGACGGTGAAGTGACACTTAGGCTCACGGCTAAGCATGAGGATGAAAAAGAAACAGAGCGTTTGTTA
AAAGAGACGGAAGTGAAAATTTTAGCGCGTGTAGGAGAGTACTTCTACGGGTATGGTGATACATCACTTGTCCGTGAAGC
TTCCAAGTCCCTGCACGAACACGGGAAAACAGTGGCAGCGGCTGAGAGCCTGACAGGCGGAATGTTTTCTGAATGGCTGA
CAGACCTTGAAGGTGCATCGTCGATTTTAAGCGGCAGTATCGTTTGTTATACAAACCAAGTCAAACAGCAGGTGCTTGGC
TGCCGTGAGGAAACATTGTCTTCTCATGGTGCTGTTAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGTGCTAGAAAGCT
TACGGGAAGTGATATTGGTATTAGCTTTACGGGTGTAGCAGGCCCTGATACCCACGAGGGGCAGCCTGTCGGAAAAGTGT
TCATCGGGCTATCTACGAAAGACCATACAGACGTGTTTGAATGGATGTTTACAGGAAGCCGGTCGGGCATTCGAAAGCGC
GCTGTGAAATACGGACTGCATCACTTGCTCAATTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-168)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

73.253

99.76

0.731
  cinA Streptococcus mutans UA159

48.317

100

0.483
  cinA Streptococcus mitis SK321

47.743

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.506

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.506

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.268

100

0.478
  cinA Streptococcus pneumoniae R6

47.268

100

0.478
  cinA Streptococcus pneumoniae D39

47.031

100

0.476
  cinA Streptococcus suis isolate S10

43.386

90.865

0.394