Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MID13_RS13010 Genome accession   NZ_CP092384
Coordinates   2926740..2927780 (-) Length   346 a.a.
NCBI ID   WP_017056586.1    Uniprot ID   A0A4V5R5U9
Organism   Vibrio gigantis strain ACE001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2921740..2932780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID13_RS12995 (MID13_12995) csrA 2922133..2922330 (-) 198 WP_004415691.1 carbon storage regulator CsrA -
  MID13_RS13000 (MID13_13000) - 2922423..2923604 (-) 1182 WP_086711982.1 aspartate kinase -
  MID13_RS13005 (MID13_13005) alaS 2923825..2926407 (-) 2583 WP_086711983.1 alanine--tRNA ligase -
  MID13_RS13010 (MID13_13010) recA 2926740..2927780 (-) 1041 WP_017056586.1 recombinase RecA Machinery gene
  MID13_RS13015 (MID13_13015) pncC 2927920..2928414 (-) 495 WP_086712030.1 nicotinamide-nucleotide amidase -
  MID13_RS13020 (MID13_13020) mutS 2928539..2931100 (+) 2562 WP_239716646.1 DNA mismatch repair protein MutS -
  MID13_RS13025 (MID13_13025) rpoS 2931234..2932214 (-) 981 WP_215406867.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37342.86 Da        Isoelectric Point: 4.9043

>NTDB_id=657095 MID13_RS13010 WP_017056586.1 2926740..2927780(-) (recA) [Vibrio gigantis strain ACE001]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYKGDKIGQGKANAGKYLRENPEVALEIDT
KLRELLLTPAVLEEKDVEKEEENEEL

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=657095 MID13_RS13010 WP_017056586.1 2926740..2927780(-) (recA) [Vibrio gigantis strain ACE001]
ATGGACGAGAATAAACAAAAAGCGTTAGCCGCAGCCCTTGGTCAGATTGAAAAGCAATTTGGTAAAGGTTCTATCATGCG
TCTTGGTGATAACCGCACAATGGACGTAGAAACTATTTCTACTGGTTCTCTATCTCTAGATATCGCACTAGGTGCTGGTG
GCCTGCCTATGGGACGTATCGTAGAAGTTTACGGTCCAGAATCATCAGGTAAAACAACGTTAACGCTTGAGCTTATTGCT
GCAGCACAAAAGGTGGGCAAGACGTGTGCTTTCGTTGATGCGGAACACGCACTAGACCCTATCTACGCTCAAAAGCTTGG
TGTTGATATCGATGCGCTTCTTGTTTCTCAACCAGATACAGGTGAGCAAGCGCTAGAAATCTGTGATGCACTGGCTCGTT
CAGGTGCAATCGATGTACTTGTTATTGACTCAGTAGCAGCACTAACACCAAAAGCTGAAATCGAAGGCGAAATGGGCGAT
AGCCATATGGGTCTTCAGGCTCGTATGCTTTCTCAAGCGATGCGTAAGCTAACTGGTAACCTTAAGCAGTCTAACTGTAT
GGCTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACAACAACGGGTGGTAACGCTC
TTAAGTTCTACGCATCTGTTCGTCTTGATATCCGCCGTACTGGTGCGATCAAAGATGGTGATGAGGTTGTTGGTAACGAA
ACGCGTATCAAGGTTGTTAAGAACAAGATTGCTGCACCGTTTAAACAAGCTGAAACTCAAATCCTATACGGCAAAGGCTT
CAACCGTGAAGGTGAGCTTATCGATTTAGGCGTTAAGAACAAGCTGGTAGAAAAAGCCGGCGCTTGGTACAGCTACAAGG
GCGACAAGATCGGCCAAGGTAAAGCTAACGCTGGTAAATACCTACGTGAAAACCCTGAGGTTGCTCTAGAGATTGATACT
AAACTTCGTGAGTTGCTACTGACTCCTGCTGTTCTTGAAGAGAAAGACGTAGAGAAAGAAGAAGAGAACGAAGAGCTATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V5R5U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

89.97

95.087

0.855
  recA Vibrio cholerae O1 biovar El Tor strain E7946

89.97

95.087

0.855
  recA Pseudomonas stutzeri DSM 10701

76.133

95.665

0.728
  recA Acinetobacter baumannii D1279779

72.807

98.844

0.72
  recA Acinetobacter baylyi ADP1

71.676

100

0.717
  recA Glaesserella parasuis strain SC1401

67.045

100

0.682
  recA Neisseria gonorrhoeae MS11

67.241

100

0.676
  recA Neisseria gonorrhoeae MS11

67.241

100

0.676
  recA Neisseria gonorrhoeae strain FA1090

67.241

100

0.676
  recA Ralstonia pseudosolanacearum GMI1000

69.817

94.798

0.662
  recA Streptococcus mutans UA159

58.453

100

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

92.197

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.775

0.584
  recA Streptococcus pneumoniae D39

61.92

93.353

0.578
  recA Streptococcus pneumoniae TIGR4

61.92

93.353

0.578
  recA Streptococcus pneumoniae Rx1

61.92

93.353

0.578
  recA Streptococcus pneumoniae R6

61.92

93.353

0.578
  recA Streptococcus mitis SK321

61.92

93.353

0.578
  recA Helicobacter pylori strain NCTC11637

61.538

93.931

0.578
  recA Helicobacter pylori 26695

61.231

93.931

0.575
  recA Streptococcus mitis NCTC 12261

61.61

93.353

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

58.529

98.266

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.819

95.665

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

92.775

0.569
  recA Streptococcus pyogenes NZ131

60.308

93.931

0.566
  recA Lactococcus lactis subsp. cremoris KW2

59.443

93.353

0.555