Detailed information NTG0657097

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: MID13_RS13025
• Genome accession: NZ_CP092384
• Coordinates: 2931234..2932214 (-)
• Length: 326 a.a.
• NCBI ID: WP_215406867.1
• Uniprot ID: -
• Organism: Vibrio gigantis strain ACE001
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2926234..2937214

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MID13_RS13010 (MID13_13010)	recA	2926740..2927780 (-)	1041	WP_017056586.1	recombinase RecA	Machinery gene
MID13_RS13015 (MID13_13015)	pncC	2927920..2928414 (-)	495	WP_086712030.1	nicotinamide-nucleotide amidase	-
MID13_RS13020 (MID13_13020)	mutS	2928539..2931100 (+)	2562	WP_239716646.1	DNA mismatch repair protein MutS	-
MID13_RS13025 (MID13_13025)	rpoS	2931234..2932214 (-)	981	WP_215406867.1	RNA polymerase sigma factor RpoS	Regulator
MID13_RS13030 (MID13_13030)	nlpD	2932313..2933227 (-)	915	WP_239716647.1	murein hydrolase activator NlpD	-
MID13_RS13035 (MID13_13035)	-	2933263..2933889 (-)	627	WP_019826319.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
MID13_RS13040 (MID13_13040)	surE	2933890..2934633 (-)	744	WP_215406863.1	5'/3'-nucleotidase SurE	-
MID13_RS13045 (MID13_13045)	truD	2934709..2935755 (-)	1047	WP_215406861.1	tRNA pseudouridine(13) synthase TruD	-
MID13_RS13050 (MID13_13050)	ispF	2935778..2936257 (-)	480	WP_004739053.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
MID13_RS13055 (MID13_13055)	ispD	2936260..2936961 (-)	702	WP_239716649.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37247.47 Da
• Isoelectric Point: 5.2708

>NTDB_id=657097 MID13_RS13025 WP_215406867.1 2931234..2932214(-) (rpoS) [Vibrio gigantis strain ACE001]
MSISNAVTKEEFDLNQATTEPEALGKAKRTVTKKTETKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=657097 MID13_RS13025 WP_215406867.1 2931234..2932214(-) (rpoS) [Vibrio gigantis strain ACE001]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGCAACCACGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAACCAAAGAAGAAGTTGAAGTTACGTCTAAAAGCTTAGATGCCACTCAACTGT
ATCTAGGCGAAATCGGTTTCTCACCACTACTAACCGCAGAAGAAGAAGTGCTTTACGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGTAAACGCATGATCGAAAGTAACCTGCGTTTGGTGGTAAAAATTTCTCGTCGTTATAGCAACCGTGGCTT
GGCACTTCTCGATCTAATCGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGTGGCTTCC
GCTTCTCAACTTACGCAACATGGTGGATTCGTCAAACCATTGAACGTGCGTTGATGAATCAGACTCGCACTATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACGGCAAGAGAACTATCACAAAAGCTTGACCACGAACCAAC
AGCTGAAGAGATCGCTTCTAAGCTAGATAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTCTAAACGAACGAGTGAGCT
CTGTAGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCAGACATCAACAATTCAGATCCTGAG
GTTTCAACACAAGATAGCGATATCAAGAACTCACTGATCTTCTGGCTTGATGAACTGAATCCTAAGCAGAAAGAGGTGCT
TGCACGTCGATTTGGCCTACTAGGTTATGAACCGTCAACGCTAGAAGAAGTTGGCCGTGAAATCAGCCTGACTCGTGAGC
GAGTTCGCCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGTGAGATTCTGATCAAGCAAGGTCTGAACATGGAAAACTTG
TTCAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.138	100	0.831