Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG787_RS10880 Genome accession   NZ_CP108243
Coordinates   2570510..2571289 (+) Length   259 a.a.
NCBI ID   WP_053743545.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00075     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2565510..2576289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG787_RS10870 (OG787_10825) - 2566376..2569276 (-) 2901 WP_405535050.1 vitamin B12-dependent ribonucleotide reductase -
  OG787_RS10875 (OG787_10830) nrdR 2569448..2569999 (-) 552 WP_369029320.1 transcriptional regulator NrdR -
  OG787_RS10880 (OG787_10835) dinR/lexA 2570510..2571289 (+) 780 WP_053743545.1 transcriptional repressor LexA Regulator
  OG787_RS10885 (OG787_10840) - 2571440..2573431 (-) 1992 WP_369029319.1 ATP-dependent DNA helicase -
  OG787_RS10890 (OG787_10845) - 2573495..2574178 (-) 684 WP_369029318.1 GNAT family N-acetyltransferase -
  OG787_RS10895 (OG787_10850) - 2574252..2576177 (-) 1926 WP_405535051.1 IucA/IucC family protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28034.76 Da        Isoelectric Point: 7.4756

>NTDB_id=657097 OG787_RS10880 WP_053743545.1 2570510..2571289(+) (dinR/lexA) [Streptomyces sp. NBC_00075]
MTTTADSATITAQDRSQGRLEPVHAMNEATNPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQGASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFKREDGHVWLLPHNSAYQP
IPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=657097 OG787_RS10880 WP_053743545.1 2570510..2571289(+) (dinR/lexA) [Streptomyces sp. NBC_00075]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCACGAATCCCGAGGGACACAAGCGGTCCCTCCCTGGGCGACCTCCAGGAATCCGAGCGGACAGCTCGGGCCTCA
CCGACCGGCAACGGCGCGTGATCGAGGTCATCAGGGACTCCGTGCAGCGACGCGGTTACCCGCCGTCGATGCGCGAGATC
GGGCAGGCAGTCGGCCTCTCCAGTACCTCATCGGTCGCACACCAGCTCATGGCCCTGGAGCGCAAGGGATTCCTGCGCCG
CGATCCACACCGCCCGCGCGCCTATGAGGTGCGCGGTTCCGACCAAGGGGCTTCCGTGCAGCCCACGGACACCGCGGGCA
AACCCGCGGCGTCCTATGTCCCACTTGTGGGACGGATCGCCGCCGGCGGTCCCATCCTCGCCGAGGAATCGGTCGAGGAC
GTGTTCCCGCTCCCCCGCCAACTGGTGGGCGACGGTGAACTGTTCGTCCTGAAGGTCGTCGGTGACTCGATGATCGAGGC
CGCGATCTGCGACGGCGACTGGGTGACCGTCCGCCGTCAGCCGGTCGCGGAGAACGGCGACATCGTGGCCGCGATGCTGG
AGGGCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTCTGGCTCCTCCCGCACAACTCCGCGTACCAGCCG
ATCCCCGGCGACGAGGCGACGATCCTCGGCAAGGTGGTGGCGGTGCTCCGCCGCGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(51-114)

Peptidase S24-like (Peptidase_S24)

(141-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.498

81.467

0.371