Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LT346_RS04485 Genome accession   NZ_CP092033
Coordinates   925964..927016 (+) Length   350 a.a.
NCBI ID   WP_005688671.1    Uniprot ID   A0A508YW64
Organism   Lacticaseibacillus rhamnosus strain VHProbi Y39     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 920964..932016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT346_RS04465 (LT346_04465) ymfI 922102..922830 (+) 729 WP_005688666.1 elongation factor P 5-aminopentanone reductase -
  LT346_RS04470 (LT346_04470) - 922917..923852 (+) 936 WP_005688668.1 helix-turn-helix domain-containing protein -
  LT346_RS04475 (LT346_04475) pgsA 923849..924442 (+) 594 WP_005688184.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LT346_RS04480 (LT346_04480) cinA 924671..925912 (+) 1242 WP_005688669.1 competence/damage-inducible protein A Machinery gene
  LT346_RS04485 (LT346_04485) recA 925964..927016 (+) 1053 WP_005688671.1 recombinase RecA Machinery gene
  LT346_RS04490 (LT346_04490) rny 927641..929212 (+) 1572 WP_005684479.1 ribonuclease Y -
  LT346_RS04495 (LT346_04495) - 929301..929957 (-) 657 WP_024129572.1 YigZ family protein -
  LT346_RS04500 (LT346_04500) - 929985..931250 (+) 1266 WP_014571217.1 DEAD/DEAH box helicase -
  LT346_RS04505 (LT346_04505) - 931409..931927 (+) 519 WP_005688681.1 ComF family protein -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37574.81 Da        Isoelectric Point: 5.5040

>NTDB_id=655228 LT346_RS04485 WP_005688671.1 925964..927016(+) (recA) [Lacticaseibacillus rhamnosus strain VHProbi Y39]
MAETERQEALATALKKIEKNFGKGAIMRMGDKVETRVSAVSSGSLAIDDALGVGGLPRGRIVEIYGPESSGKTTVALHAV
AMVQQHGGTAAYIDAENAMDPKYAAALGVNIDELLLSQPDTGEQGLEIADELVASGAIDILVVDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGAINKTKTIALFINQIREKVGIVFGNPEITPGGRALKFYATVRMEVRRSEQIKNGADIIGN
RTKIKVVKNKVAPPFKTAIVDIMYGQGISQSGELVDMAVEKDIIEKAGSWYAYQGERIGQGREHAKSYLETHEELRRTIE
KQVRLAYGMSPDHVIDQADTETDTTTSAAS

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=655228 LT346_RS04485 WP_005688671.1 925964..927016(+) (recA) [Lacticaseibacillus rhamnosus strain VHProbi Y39]
ATGGCAGAAACCGAACGACAGGAAGCATTGGCAACGGCGTTAAAGAAGATTGAGAAGAATTTTGGCAAAGGGGCCATTAT
GCGGATGGGGGACAAAGTGGAGACACGCGTTTCTGCTGTTTCCAGCGGATCACTTGCAATTGATGATGCACTTGGTGTTG
GTGGGCTGCCACGTGGACGAATTGTTGAAATCTATGGTCCGGAAAGTTCCGGAAAAACGACTGTGGCCTTGCATGCAGTT
GCCATGGTTCAGCAACACGGTGGCACGGCCGCTTATATTGATGCCGAAAATGCCATGGATCCCAAATATGCAGCGGCACT
TGGCGTCAATATTGATGAGCTGTTGCTTTCACAGCCGGATACCGGTGAACAAGGATTGGAAATTGCCGATGAGCTGGTTG
CATCGGGAGCCATTGATATTTTAGTGGTTGATTCAGTGGCAGCTCTGGTACCGCGCGCAGAAATTGAAGGGGACATGGGT
GATGCACACGTTGGGTTACAGGCACGGCTAATGTCACAGGCCTTACGAAAGTTGTCTGGGGCGATCAATAAAACCAAAAC
AATTGCCTTGTTCATCAACCAGATCCGGGAAAAAGTCGGTATTGTATTCGGCAATCCTGAAATTACGCCGGGCGGTCGGG
CGCTGAAGTTTTATGCCACTGTGCGTATGGAAGTGCGCCGTTCTGAGCAGATCAAAAACGGTGCCGATATTATTGGCAAT
CGCACCAAAATCAAAGTGGTTAAAAATAAAGTTGCACCGCCGTTTAAGACTGCCATTGTTGATATTATGTATGGTCAAGG
CATTTCCCAAAGCGGTGAACTTGTCGACATGGCGGTTGAAAAAGACATCATTGAAAAGGCGGGTTCGTGGTATGCCTACC
AAGGCGAGCGCATTGGTCAAGGACGTGAACACGCTAAAAGCTATCTTGAAACGCATGAGGAGCTGCGCCGAACCATTGAA
AAACAAGTCCGGCTTGCTTATGGAATGTCGCCGGATCACGTTATCGATCAAGCGGACACGGAGACAGATACTACCACATC
TGCTGCATCATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A508YW64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

82.424

94.286

0.777
  recA Bacillus subtilis subsp. subtilis str. 168

70.783

94.857

0.671
  recA Streptococcus pneumoniae Rx1

67.251

97.714

0.657
  recA Streptococcus pneumoniae D39

67.251

97.714

0.657
  recA Streptococcus pneumoniae R6

67.251

97.714

0.657
  recA Streptococcus pneumoniae TIGR4

67.251

97.714

0.657
  recA Streptococcus pyogenes NZ131

69.207

93.714

0.649
  recA Streptococcus mitis NCTC 12261

68.693

94

0.646
  recA Streptococcus mitis SK321

68.693

94

0.646
  recA Streptococcus mutans UA159

68.693

94

0.646
  recA Lactococcus lactis subsp. cremoris KW2

66.867

94.857

0.634
  recA Ralstonia pseudosolanacearum GMI1000

62.54

90

0.563
  recA Neisseria gonorrhoeae MS11

59.878

94

0.563
  recA Neisseria gonorrhoeae MS11

59.878

94

0.563
  recA Neisseria gonorrhoeae strain FA1090

59.878

94

0.563
  recA Acinetobacter baylyi ADP1

61.442

91.143

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.286

0.56
  recA Acinetobacter baumannii D1279779

61.129

91.143

0.557
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

57.567

96.286

0.554
  recA Glaesserella parasuis strain SC1401

55.362

98.571

0.546
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.561

91.143

0.543
  recA Vibrio cholerae strain A1552

59.561

91.143

0.543
  recA Pseudomonas stutzeri DSM 10701

59.006

92

0.543
  recA Helicobacter pylori strain NCTC11637

55.657

93.429

0.52
  recA Helicobacter pylori 26695

55.352

93.429

0.517
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.385

92.857

0.514