Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LT346_RS04480 Genome accession   NZ_CP092033
Coordinates   924671..925912 (+) Length   413 a.a.
NCBI ID   WP_005688669.1    Uniprot ID   A0A508YV25
Organism   Lacticaseibacillus rhamnosus strain VHProbi Y39     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 919671..930912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LT346_RS04460 (LT346_04460) yfmH 920810..922102 (+) 1293 WP_005688664.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LT346_RS04465 (LT346_04465) ymfI 922102..922830 (+) 729 WP_005688666.1 elongation factor P 5-aminopentanone reductase -
  LT346_RS04470 (LT346_04470) - 922917..923852 (+) 936 WP_005688668.1 helix-turn-helix domain-containing protein -
  LT346_RS04475 (LT346_04475) pgsA 923849..924442 (+) 594 WP_005688184.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LT346_RS04480 (LT346_04480) cinA 924671..925912 (+) 1242 WP_005688669.1 competence/damage-inducible protein A Machinery gene
  LT346_RS04485 (LT346_04485) recA 925964..927016 (+) 1053 WP_005688671.1 recombinase RecA Machinery gene
  LT346_RS04490 (LT346_04490) rny 927641..929212 (+) 1572 WP_005684479.1 ribonuclease Y -
  LT346_RS04495 (LT346_04495) - 929301..929957 (-) 657 WP_024129572.1 YigZ family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44384.10 Da        Isoelectric Point: 8.3237

>NTDB_id=655227 LT346_RS04480 WP_005688669.1 924671..925912(+) (cinA) [Lacticaseibacillus rhamnosus strain VHProbi Y39]
MQAEIIAIGTEILMGQITNTNGAYMAKQLATLGIASYHQQVVGDNAKRLADAISLAEQRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDAGAMAKLAARVKQQQRPMTPNNRLQAMYPKGAIVLANRVGLAVGAWVEQRQHAYVLLPGPPKEFVPMV
DHELLPRLAKYSGHQEVLESRVMRFFGVGESQLVTDLSDLIANQTNPTLATYIKDHEVTVRVTASGKTQAEAAAKLEPMI
GIIMDREGRYFYGYGDDNSLAQELVKALAASDKQISAAESLTAGAFQAALGDVPGVSAYFKGGFVTYALATKAAFLNIDA
RQLAEHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDKLEGQPAGTVWIGLARLGEKPIAQVYHFPGGRNDVRKRAV
MTGMMMVLKRLRE

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=655227 LT346_RS04480 WP_005688669.1 924671..925912(+) (cinA) [Lacticaseibacillus rhamnosus strain VHProbi Y39]
ATGCAAGCAGAAATTATTGCTATCGGAACGGAAATTCTGATGGGACAAATCACAAATACAAATGGCGCGTATATGGCTAA
ACAACTGGCTACATTAGGTATTGCAAGCTATCATCAACAGGTTGTTGGGGATAACGCAAAACGACTGGCTGACGCGATAA
GTTTGGCTGAACAACGCAGTGATATCGTTATTTTGATTGGCGGTTTAGGACCAACACCGGATGATTTAACGAAGCAAACC
CTAGCCGCACACCTGAATTTACCCTTGGTGGAAGACGCTGGCGCTATGGCCAAGTTGGCTGCGCGGGTTAAACAACAGCA
ACGTCCAATGACACCCAATAATCGCTTGCAAGCGATGTATCCCAAAGGCGCAATCGTATTGGCCAATCGTGTTGGGTTGG
CGGTCGGCGCATGGGTTGAGCAGCGCCAACACGCCTATGTTTTATTGCCGGGACCACCTAAAGAGTTTGTGCCAATGGTT
GATCATGAACTGTTGCCACGACTGGCAAAATATAGCGGGCATCAAGAAGTTTTGGAAAGTCGCGTGATGCGTTTCTTTGG
TGTCGGCGAATCGCAACTTGTGACAGATTTAAGTGATTTAATTGCCAACCAGACGAATCCGACACTTGCAACTTATATAA
AAGATCATGAGGTGACAGTTCGGGTAACTGCGAGTGGCAAAACACAAGCAGAAGCCGCGGCAAAACTTGAGCCAATGATC
GGCATCATTATGGATCGTGAAGGCCGCTACTTTTACGGCTACGGTGACGATAACAGTCTTGCTCAGGAATTAGTCAAAGC
ATTGGCGGCTAGTGATAAGCAAATTAGTGCCGCTGAAAGCCTGACTGCAGGTGCATTTCAAGCGGCATTGGGAGACGTTC
CGGGAGTCTCGGCTTATTTCAAAGGCGGCTTCGTTACGTACGCTTTAGCGACAAAAGCTGCATTTTTAAATATCGATGCC
CGTCAGCTAGCAGAACATGGTGTGGTGAGTGAATTTACTGCCAAAGCAATGGCAGAGCATGCTCGTCAACGAGCCGCGGC
AGACATTGCCGTTAGTTTTACCGGAGTTGCCGGTCCTGACAAGCTGGAAGGACAGCCAGCCGGCACCGTCTGGATTGGTT
TGGCGCGGTTAGGAGAGAAACCAATAGCACAAGTTTATCATTTTCCGGGTGGGCGAAATGACGTCCGCAAGCGCGCCGTT
ATGACGGGGATGATGATGGTGTTGAAGCGTTTACGCGAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A508YV25

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

51.781

100

0.528
  cinA Streptococcus mitis NCTC 12261

51.781

100

0.528
  cinA Streptococcus pneumoniae TIGR4

51.306

100

0.523
  cinA Streptococcus pneumoniae Rx1

50.831

100

0.518
  cinA Streptococcus pneumoniae R6

50.831

100

0.518
  cinA Streptococcus pneumoniae D39

50.594

100

0.516
  cinA Streptococcus mutans UA159

51.202

100

0.516
  cinA Bacillus subtilis subsp. subtilis str. 168

44.417

99.758

0.443
  cinA Streptococcus suis isolate S10

41.534

91.525

0.38