Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LBCZ_RS04225 Genome accession   NZ_AP012544
Coordinates   813080..813997 (+) Length   305 a.a.
NCBI ID   WP_025012515.1    Uniprot ID   A0AAD1ANZ5
Organism   Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 808080..818997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBCZ_RS04205 (LBCZ_0779) ymfI 809168..809896 (+) 729 WP_025012511.1 elongation factor P 5-aminopentanone reductase -
  LBCZ_RS04210 (LBCZ_0780) - 809983..810921 (+) 939 WP_025012512.1 helix-turn-helix domain-containing protein -
  LBCZ_RS04215 (LBCZ_0781) pgsA 810918..811511 (+) 594 WP_025012513.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LBCZ_RS04220 (LBCZ_0782) cinA 811784..813025 (+) 1242 WP_025012514.1 competence/damage-inducible protein A Machinery gene
  LBCZ_RS04225 (LBCZ_0783) recA 813080..813997 (+) 918 WP_025012515.1 recombinase RecA Machinery gene
  LBCZ_RS04230 (LBCZ_0784) rny 814598..816169 (+) 1572 WP_010489446.1 ribonuclease Y -
  LBCZ_RS04235 (LBCZ_0785) - 816315..816968 (-) 654 WP_025012516.1 YigZ family protein -
  LBCZ_RS04240 (LBCZ_0787) - 816996..818258 (+) 1263 WP_039638822.1 DEAD/DEAH box helicase -
  LBCZ_RS04245 (LBCZ_0788) - 818416..818934 (+) 519 WP_025012517.1 ComF family protein -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33058.79 Da        Isoelectric Point: 7.4608

>NTDB_id=65328 LBCZ_RS04225 WP_025012515.1 813080..813997(+) (recA) [Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393]
MADTERQEALATALKKIEKNFGKGAIMKMGDKADTRVSAISSGSLAIDEVLGVGGLPRGRIVEMYGPESSGETTVALHAV
AMVQQHGGTAAYIDAENAMDPKYATALVPQAEIDGDMGDAHVGLQARLMSQALRKLSGNISKTKTIAVFINQIREKVGIV
FGNPEITPGGRALKFYATVRLEIRRSEQVKNGAEIVGNRTKIKVVKNKVAPPFKVAIVDIMYGRGISQSGELVDMAVEKD
IVEKSGSWYAYQGERIGQGREHAKAYLETHEEMRKKIEGQVREAYGMPLNQVIEVDDPDESARAS

Nucleotide


Download         Length: 918 bp        

>NTDB_id=65328 LBCZ_RS04225 WP_025012515.1 813080..813997(+) (recA) [Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393]
GTGGCAGACACAGAACGACAAGAAGCGTTAGCAACAGCACTAAAAAAGATTGAAAAGAATTTTGGCAAAGGTGCCATCAT
GAAAATGGGGGACAAGGCTGATACGCGGGTTTCGGCCATTTCCAGTGGCTCACTTGCGATTGACGAAGTGCTTGGCGTTG
GTGGGTTGCCACGCGGGCGGATTGTTGAGATGTACGGTCCTGAAAGCTCCGGGGAAACCACCGTTGCCTTGCATGCGGTG
GCAATGGTGCAGCAGCATGGCGGAACCGCCGCGTATATTGATGCGGAAAATGCCATGGATCCTAAGTATGCGACCGCGCT
GGTTCCGCAAGCCGAGATTGACGGAGATATGGGCGATGCGCACGTTGGCCTACAGGCGCGACTGATGTCACAAGCGCTGC
GGAAGCTGTCTGGCAACATCAGTAAGACGAAAACTATTGCCGTCTTTATTAACCAAATTCGTGAGAAAGTCGGCATCGTT
TTTGGCAACCCAGAAATAACCCCGGGTGGTCGGGCATTAAAGTTTTATGCAACAGTGCGGCTGGAAATCCGCCGTTCCGA
ACAGGTTAAAAACGGTGCTGAAATTGTCGGCAATCGTACTAAAATCAAGGTCGTTAAAAATAAAGTGGCACCGCCTTTTA
AAGTGGCGATTGTGGACATTATGTATGGCCGCGGCATTTCGCAAAGCGGTGAACTAGTCGATATGGCGGTTGAAAAAGAC
ATCGTTGAAAAGTCCGGGTCGTGGTATGCCTATCAAGGTGAGCGGATTGGCCAAGGACGCGAGCATGCCAAGGCTTATCT
TGAAACTCATGAGGAAATGCGTAAAAAGATTGAGGGGCAAGTGCGTGAAGCTTACGGGATGCCGTTAAATCAGGTGATTG
AAGTGGACGATCCGGATGAATCGGCGCGAGCTTCATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(105-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

66.765

100

0.744
  recA Bacillus subtilis subsp. subtilis str. 168

59.94

100

0.652
  recA Streptococcus mitis NCTC 12261

54.203

100

0.613
  recA Streptococcus mutans UA159

54.678

100

0.613
  recA Lactococcus lactis subsp. cremoris KW2

55.927

100

0.603
  recA Streptococcus pyogenes NZ131

55.793

100

0.6
  recA Streptococcus pneumoniae R6

55.623

100

0.6
  recA Streptococcus pneumoniae Rx1

55.623

100

0.6
  recA Streptococcus pneumoniae D39

55.623

100

0.6
  recA Streptococcus pneumoniae TIGR4

55.623

100

0.6
  recA Streptococcus mitis SK321

55.623

100

0.6
  recA Ralstonia pseudosolanacearum GMI1000

52.294

100

0.561
  recA Acinetobacter baumannii D1279779

49.267

100

0.551
  recA Pseudomonas stutzeri DSM 10701

51.553

100

0.544
  recA Helicobacter pylori strain NCTC11637

47.399

100

0.538
  recA Acinetobacter baylyi ADP1

50.774

100

0.538
  recA Glaesserella parasuis strain SC1401

47.953

100

0.538
  recA Helicobacter pylori 26695

47.11

100

0.534
  recA Neisseria gonorrhoeae MS11

51.258

100

0.534
  recA Neisseria gonorrhoeae MS11

51.258

100

0.534
  recA Neisseria gonorrhoeae strain FA1090

51.258

100

0.534
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

49.847

100

0.534
  recA Vibrio cholerae O1 biovar El Tor strain E7946

49.091

100

0.531
  recA Vibrio cholerae strain A1552

49.091

100

0.531
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.536

100

0.525
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

46.646

100

0.502

Multiple sequence alignment