Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LBCZ_RS04220 Genome accession   NZ_AP012544
Coordinates   811784..813025 (+) Length   413 a.a.
NCBI ID   WP_025012514.1    Uniprot ID   A0AAD1APK8
Organism   Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 806784..818025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBCZ_RS04200 (LBCZ_0778) yfmH 807876..809171 (+) 1296 WP_039638820.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LBCZ_RS04205 (LBCZ_0779) ymfI 809168..809896 (+) 729 WP_025012511.1 elongation factor P 5-aminopentanone reductase -
  LBCZ_RS04210 (LBCZ_0780) - 809983..810921 (+) 939 WP_025012512.1 helix-turn-helix domain-containing protein -
  LBCZ_RS04215 (LBCZ_0781) pgsA 810918..811511 (+) 594 WP_025012513.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LBCZ_RS04220 (LBCZ_0782) cinA 811784..813025 (+) 1242 WP_025012514.1 competence/damage-inducible protein A Machinery gene
  LBCZ_RS04225 (LBCZ_0783) recA 813080..813997 (+) 918 WP_025012515.1 recombinase RecA Machinery gene
  LBCZ_RS04230 (LBCZ_0784) rny 814598..816169 (+) 1572 WP_010489446.1 ribonuclease Y -
  LBCZ_RS04235 (LBCZ_0785) - 816315..816968 (-) 654 WP_025012516.1 YigZ family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44148.57 Da        Isoelectric Point: 6.3707

>NTDB_id=65327 LBCZ_RS04220 WP_025012514.1 811784..813025(+) (cinA) [Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393]
MQAEIIAVGTEILMGQITNTNGAYMAKQLAALGIASYHQQVVGDNVQRLVDAISLAEKRSDIVILIGGLGPTPDDLTKQT
LAAHLNLPLVEDADAMAKLAAGVKQQQRAMTPNNKLQAMYPQGADILVNRVGLAVGAWVEQHQHAYVLLPGPPREFIPMV
DHELLPHLAKYSGHHEAFVSRVMRFFGVGESQLVTDLGDLIAKQTNPTLATYIKDHEVTIRVTASGETQADAEAKLEPVI
GAIMDREGRYFYGYGDDNSLAKELVKALAATDKQITAAESLTAGAFQAALGDVPGVSNYFKGGFVTYALATKAAFLNIDA
RELAAHGVVSEFTAKAMAEHARQRAAADIAVSFTGVAGPDTLEGQPAGTVWIGLARMGQVPVAQIYHFPGGRNDVRKRAV
MTGMMIALKSLRD

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=65327 LBCZ_RS04220 WP_025012514.1 811784..813025(+) (cinA) [Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393]
ATGCAAGCAGAAATTATTGCTGTCGGAACTGAAATTCTGATGGGACAGATTACTAATACTAATGGCGCCTATATGGCTAA
ACAGTTGGCCGCTTTAGGCATTGCCAGCTATCATCAACAGGTTGTCGGTGACAATGTGCAACGCCTGGTTGATGCGATCA
GCTTAGCCGAAAAACGCAGTGACATTGTGATTTTGATCGGTGGTTTAGGACCCACACCAGATGACCTGACGAAACAAACG
TTGGCGGCTCATCTGAATTTGCCGTTGGTTGAAGATGCGGACGCCATGGCAAAACTGGCGGCGGGGGTTAAACAACAGCA
ACGGGCGATGACGCCAAATAATAAGTTACAGGCAATGTATCCGCAAGGTGCTGATATATTGGTTAATCGCGTCGGGCTGG
CAGTCGGTGCCTGGGTCGAACAACACCAACATGCCTATGTACTACTGCCTGGTCCGCCTAGGGAATTTATCCCAATGGTT
GATCATGAGCTATTACCTCATTTGGCCAAGTATAGCGGCCATCATGAAGCTTTTGTCAGCCGCGTCATGCGCTTCTTTGG
TGTTGGTGAATCACAATTGGTGACGGATTTGGGTGATTTAATTGCCAAGCAGACGAATCCGACACTGGCAACGTATATCA
AGGATCATGAAGTGACCATTCGAGTGACGGCCAGCGGTGAGACCCAGGCAGATGCTGAAGCCAAACTGGAACCGGTGATC
GGTGCCATTATGGATCGCGAGGGACGTTACTTTTATGGTTATGGTGATGATAATAGCCTCGCTAAAGAGTTGGTCAAGGC
ATTAGCGGCGACCGACAAGCAAATAACGGCAGCAGAGAGCTTGACAGCCGGTGCGTTTCAGGCGGCTTTGGGGGATGTTC
CCGGCGTCTCGAATTATTTCAAAGGCGGTTTTGTGACGTACGCATTAGCCACTAAAGCAGCATTTTTGAATATCGATGCG
CGTGAGTTAGCGGCTCATGGGGTAGTGAGTGAATTTACCGCCAAAGCAATGGCCGAGCATGCCCGTCAGCGGGCTGCGGC
CGATATTGCAGTCAGTTTTACCGGCGTGGCCGGGCCCGACACACTGGAAGGTCAGCCAGCCGGGACAGTTTGGATCGGCT
TGGCGCGGATGGGCCAAGTGCCGGTTGCACAGATTTATCATTTTCCCGGTGGCCGCAATGATGTTCGCAAACGCGCGGTT
ATGACCGGCATGATGATCGCATTGAAGAGCTTGCGGGATTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

50.358

100

0.511
  cinA Streptococcus mitis NCTC 12261

50.358

100

0.511
  cinA Streptococcus pneumoniae TIGR4

49.881

100

0.506
  cinA Streptococcus mutans UA159

50.483

100

0.506
  cinA Streptococcus pneumoniae Rx1

49.403

100

0.501
  cinA Streptococcus pneumoniae R6

49.403

100

0.501
  cinA Streptococcus pneumoniae D39

49.165

100

0.499
  cinA Bacillus subtilis subsp. subtilis str. 168

44.769

99.516

0.446
  cinA Streptococcus suis isolate S10

42.147

92.494

0.39

Multiple sequence alignment