Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LBPC_RS04620 Genome accession   NZ_AP012541
Coordinates   912476..913537 (+) Length   353 a.a.
NCBI ID   WP_003661345.1    Uniprot ID   A0A8E0I4T6
Organism   Lacticaseibacillus paracasei subsp. paracasei strain JCM 8130     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 907476..918537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBPC_RS04600 (LBPC_0859) ymfI 908469..909197 (+) 729 WP_003569514.1 elongation factor P 5-aminopentanone reductase -
  LBPC_RS04605 (LBPC_0860) - 909284..910213 (+) 930 WP_003593861.1 helix-turn-helix domain-containing protein -
  LBPC_RS04610 (LBPC_0861) pgsA 910210..910803 (+) 594 WP_003564171.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LBPC_RS04615 (LBPC_0862) cinA 911178..912419 (+) 1242 WP_003661346.1 competence/damage-inducible protein A Machinery gene
  LBPC_RS04620 (LBPC_0863) recA 912476..913537 (+) 1062 WP_003661345.1 recombinase RecA Machinery gene
  LBPC_RS04625 (LBPC_0864) rny 913839..915410 (+) 1572 WP_032780956.1 ribonuclease Y -
  LBPC_RS04630 (LBPC_0865) - 915504..916154 (-) 651 WP_003593868.1 YigZ family protein -
  LBPC_RS04635 (LBPC_0866) - 916182..917444 (+) 1263 WP_016365283.1 helicase-related protein -
  LBPC_RS04640 (LBPC_0867) - 917657..918118 (+) 462 WP_003583965.1 ComF family protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37775.97 Da        Isoelectric Point: 5.8234

>NTDB_id=65297 LBPC_RS04620 WP_003661345.1 912476..913537(+) (recA) [Lacticaseibacillus paracasei subsp. paracasei strain JCM 8130]
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGSFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASVSEDQPEIHQQAEV

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=65297 LBPC_RS04620 WP_003661345.1 912476..913537(+) (recA) [Lacticaseibacillus paracasei subsp. paracasei strain JCM 8130]
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCGGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGAGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGTG
CATTGAAGTTTTATGCGACTGTTCGGTTAGAAATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAAGCAGGGTCATGGTACGCGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCTTCGGTCAGTGAAGATCAACCCGAAAT
ACATCAACAGGCTGAAGTATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.674

98.3

0.773
  recA Bacillus subtilis subsp. subtilis str. 168

73.846

92.068

0.68
  recA Streptococcus mutans UA159

67.63

98.017

0.663
  recA Streptococcus mitis SK321

67.63

98.017

0.663
  recA Streptococcus mitis NCTC 12261

67.63

98.017

0.663
  recA Streptococcus pyogenes NZ131

70.303

93.484

0.657
  recA Streptococcus pneumoniae Rx1

69.184

93.768

0.649
  recA Streptococcus pneumoniae D39

69.184

93.768

0.649
  recA Streptococcus pneumoniae R6

69.184

93.768

0.649
  recA Streptococcus pneumoniae TIGR4

69.184

93.768

0.649
  recA Lactococcus lactis subsp. cremoris KW2

68.58

93.768

0.643
  recA Ralstonia pseudosolanacearum GMI1000

65.176

88.669

0.578
  recA Neisseria gonorrhoeae MS11

62.08

92.635

0.575
  recA Neisseria gonorrhoeae MS11

62.08

92.635

0.575
  recA Neisseria gonorrhoeae strain FA1090

62.08

92.635

0.575
  recA Acinetobacter baylyi ADP1

58.14

97.45

0.567
  recA Pseudomonas stutzeri DSM 10701

58.235

96.317

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

91.501

0.558
  recA Acinetobacter baumannii D1279779

60.748

90.935

0.552
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.716

92.635

0.544
  recA Glaesserella parasuis strain SC1401

54.545

99.717

0.544
  recA Helicobacter pylori strain NCTC11637

57.879

93.484

0.541
  recA Helicobacter pylori 26695

57.879

93.484

0.541
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.879

90.935

0.535
  recA Vibrio cholerae strain A1552

58.879

90.935

0.535
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.963

92.635

0.518

Multiple sequence alignment