Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LBPC_RS04615 Genome accession   NZ_AP012541
Coordinates   911178..912419 (+) Length   413 a.a.
NCBI ID   WP_003661346.1    Uniprot ID   A0A8E0M3Q3
Organism   Lacticaseibacillus paracasei subsp. paracasei strain JCM 8130     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 906178..917419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBPC_RS04595 (LBPC_0858) yfmH 907177..908469 (+) 1293 WP_003661348.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LBPC_RS04600 (LBPC_0859) ymfI 908469..909197 (+) 729 WP_003569514.1 elongation factor P 5-aminopentanone reductase -
  LBPC_RS04605 (LBPC_0860) - 909284..910213 (+) 930 WP_003593861.1 helix-turn-helix domain-containing protein -
  LBPC_RS04610 (LBPC_0861) pgsA 910210..910803 (+) 594 WP_003564171.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LBPC_RS04615 (LBPC_0862) cinA 911178..912419 (+) 1242 WP_003661346.1 competence/damage-inducible protein A Machinery gene
  LBPC_RS04620 (LBPC_0863) recA 912476..913537 (+) 1062 WP_003661345.1 recombinase RecA Machinery gene
  LBPC_RS04625 (LBPC_0864) rny 913839..915410 (+) 1572 WP_032780956.1 ribonuclease Y -
  LBPC_RS04630 (LBPC_0865) - 915504..916154 (-) 651 WP_003593868.1 YigZ family protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44240.60 Da        Isoelectric Point: 6.1809

>NTDB_id=65296 LBPC_RS04615 WP_003661346.1 911178..912419(+) (cinA) [Lacticaseibacillus paracasei subsp. paracasei strain JCM 8130]
MQAEIIAVGTEILMGQITNTNGAYMAKQLTALGIDSYHQQVVGDNGPRLGEAIKLAESRSNLVILIGGLGPTPDDLTKQT
LAAHLNRKLVEDPDAMAKLQARVKQQQRPMTPNNQLQAMYPEGADILVNRVGLAVGAWIVNGQHTYVLLPGPPKEFVPMV
DHELLPRLAKWSGHAEIMVSRVLRFFGIGESQLVTDLDDLIANQTDPTIATYIKDHEVTVRVTASGATEKDADAKLEPMI
GAIMDRDGQYFYGYGDDNSLAKEVVKTLAANDMQITAAESLTAGAFQAALGDVPGVSTYFKGGFVTYSLATKAAFLAIDA
RELAAHGVVSAFTAKAMAEHARRKAAADISVSFTGVAGPDTLEGQPAGTVWIGLARRGQLPEAHVYHFPGGRNDVRQRAV
MTGMMLALRALQA

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=65296 LBPC_RS04615 WP_003661346.1 911178..912419(+) (cinA) [Lacticaseibacillus paracasei subsp. paracasei strain JCM 8130]
ATGCAAGCAGAGATTATTGCTGTCGGGACAGAGATCCTGATGGGACAGATTACTAACACAAATGGTGCCTATATGGCTAA
GCAACTGACAGCACTGGGTATTGATAGCTACCATCAACAGGTGGTGGGAGACAACGGGCCGCGACTTGGGGAGGCCATTA
AGTTGGCGGAAAGTCGCAGTAATTTAGTTATTTTGATTGGCGGGTTAGGACCGACACCAGATGATCTGACCAAGCAAACA
TTGGCAGCGCACTTGAACCGCAAATTGGTTGAAGATCCTGACGCTATGGCTAAATTACAGGCGCGCGTCAAGCAACAGCA
GCGGCCAATGACGCCTAATAATCAATTACAGGCCATGTATCCGGAAGGCGCCGATATTTTGGTCAATCGGGTTGGCTTAG
CGGTTGGCGCGTGGATCGTCAATGGGCAGCACACCTATGTCTTATTGCCGGGACCACCGAAGGAATTCGTTCCGATGGTT
GATCATGAACTGCTGCCGCGGCTAGCAAAATGGAGCGGCCACGCGGAAATTATGGTCAGCCGGGTCTTACGTTTCTTTGG
CATTGGCGAATCGCAACTAGTGACAGATCTGGACGACTTGATTGCCAACCAAACCGATCCGACCATTGCAACTTATATCA
AGGATCATGAGGTGACGGTGCGCGTCACTGCCAGTGGCGCTACCGAAAAAGACGCTGATGCAAAGTTAGAACCAATGATC
GGTGCCATCATGGATCGTGATGGTCAATATTTTTACGGCTACGGTGACGACAATAGTTTGGCAAAAGAGGTTGTGAAGAC
GCTTGCGGCAAATGATATGCAAATTACTGCAGCTGAGAGTTTGACTGCTGGCGCATTTCAAGCAGCGTTAGGCGATGTGC
CGGGGGTATCCACTTATTTTAAGGGCGGTTTTGTCACTTACTCACTTGCAACAAAGGCCGCTTTTTTGGCAATTGATGCT
CGCGAATTAGCGGCACACGGAGTTGTCAGCGCATTTACAGCCAAGGCGATGGCTGAACATGCTCGGCGTAAGGCAGCGGC
GGATATAAGTGTCAGCTTTACCGGCGTTGCCGGTCCAGACACGCTGGAAGGACAGCCTGCTGGTACGGTTTGGATCGGTT
TAGCGCGGCGCGGCCAACTGCCTGAAGCACATGTTTACCATTTTCCTGGCGGTCGCAATGATGTTCGGCAGCGTGCTGTG
ATGACTGGTATGATGCTTGCATTAAGGGCGCTGCAGGCCTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

52.123

100

0.535
  cinA Streptococcus mitis SK321

52.009

100

0.533
  cinA Streptococcus pneumoniae TIGR4

51.651

100

0.53
  cinA Streptococcus pneumoniae R6

51.179

100

0.525
  cinA Streptococcus pneumoniae Rx1

51.179

100

0.525
  cinA Streptococcus mutans UA159

52.415

100

0.525
  cinA Streptococcus pneumoniae D39

50.943

100

0.523
  cinA Bacillus subtilis subsp. subtilis str. 168

44.769

99.516

0.446
  cinA Streptococcus suis isolate S10

42.328

91.525

0.387

Multiple sequence alignment