Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LVJ83_RS09485 Genome accession   NZ_CP091508
Coordinates   2057492..2058571 (+) Length   359 a.a.
NCBI ID   WP_244784263.1    Uniprot ID   -
Organism   Uruburuella testudinis strain CCUG 63373m     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2052492..2063571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ83_RS09475 (LVJ83_09475) - 2053113..2054741 (+) 1629 WP_244784261.1 YdgA family protein -
  LVJ83_RS09480 (LVJ83_09480) recD 2055176..2056915 (-) 1740 WP_244784262.1 exodeoxyribonuclease V subunit alpha Machinery gene
  LVJ83_RS09485 (LVJ83_09485) recA 2057492..2058571 (+) 1080 WP_244784263.1 recombinase RecA Machinery gene
  LVJ83_RS09490 (LVJ83_09490) trpE 2059382..2060857 (+) 1476 WP_244784264.1 anthranilate synthase component I -
  LVJ83_RS09495 (LVJ83_09495) - 2061262..2062407 (+) 1146 WP_244784265.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  LVJ83_RS09500 (LVJ83_09500) tmk 2062505..2063128 (+) 624 WP_244784266.1 dTMP kinase -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38846.46 Da        Isoelectric Point: 5.2364

>NTDB_id=651794 LVJ83_RS09485 WP_244784263.1 2057492..2058571(+) (recA) [Uruburuella testudinis strain CCUG 63373m]
MSDEKNKSDEKKSDEKGKALAAALAQIEKQFGKGSIMKMDGSHKDENLEVVSTGSLGLDLALGVGGLPRGRVVEIFGPES
SGKTTLCLETIAQCQKNGGVCAFIDAENAFDPVYARKLGVKVEDLMVSQPDTGEQALEICDMLVRSGGVDMVVVDSVAAL
VPKAEIEGEMGDSHVGLQARLMSQALRKLTGHIKKTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIG
QIKKGDDVLGNETRVKVIKNKVAPPFRQAEFDILYGEGVSWEGELIDIGVKHNIVEKSGAWYSYNGAKIGQGKDNVRVWL
KENPEVAKEIDAKIRAAVGVKVEITEGKIDETDGEQPEE

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=651794 LVJ83_RS09485 WP_244784263.1 2057492..2058571(+) (recA) [Uruburuella testudinis strain CCUG 63373m]
ATGTCAGACGAAAAAAACAAATCAGATGAAAAAAAATCAGATGAAAAAGGCAAAGCCCTTGCCGCAGCCCTAGCCCAAAT
TGAAAAGCAATTCGGCAAAGGCTCCATCATGAAAATGGACGGCAGCCACAAAGATGAAAATCTCGAAGTAGTGTCCACCG
GCTCGCTCGGCTTAGATTTGGCGCTCGGCGTAGGCGGCCTGCCCCGCGGTCGTGTAGTAGAAATTTTCGGCCCCGAATCA
TCCGGCAAAACCACCCTCTGCCTCGAAACCATCGCCCAATGCCAGAAAAACGGCGGCGTATGCGCCTTTATCGATGCCGA
AAACGCTTTCGACCCGGTTTACGCCCGCAAGCTCGGCGTTAAAGTGGAAGACCTGATGGTGTCCCAGCCCGACACCGGCG
AGCAGGCGCTTGAAATCTGCGACATGCTGGTACGCTCCGGCGGTGTGGATATGGTGGTGGTCGATTCCGTGGCCGCGCTG
GTGCCGAAAGCCGAAATCGAAGGCGAAATGGGCGACAGCCACGTCGGCCTGCAAGCCCGCCTGATGAGCCAGGCGTTGCG
CAAGCTTACCGGCCACATCAAAAAAACCAACACTCTGGTGATTTTCATCAACCAAATCCGCATGAAAATCGGCGTGATGT
TCGGCAGCCCCGAAACCACCACCGGCGGTAACGCGCTGAAATTCTACGCATCCGTGCGCCTGGATATCCGCCGTATCGGC
CAGATTAAAAAAGGCGACGATGTTTTGGGCAACGAAACCCGCGTCAAAGTGATTAAAAACAAAGTCGCCCCGCCGTTCCG
CCAAGCCGAATTCGACATTCTCTACGGCGAAGGCGTCAGCTGGGAAGGCGAGCTGATCGATATCGGCGTCAAACACAATA
TCGTCGAAAAATCCGGCGCATGGTACAGCTATAACGGCGCCAAAATCGGCCAAGGAAAAGACAATGTGCGCGTATGGCTG
AAAGAAAACCCGGAGGTGGCCAAAGAAATCGATGCCAAAATCCGCGCCGCAGTCGGCGTTAAAGTAGAAATTACCGAGGG
CAAAATCGACGAAACCGACGGCGAGCAACCGGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

88.184

96.657

0.852
  recA Neisseria gonorrhoeae strain FA1090

88.184

96.657

0.852
  recA Neisseria gonorrhoeae MS11

88.184

96.657

0.852
  recA Ralstonia pseudosolanacearum GMI1000

78.025

87.465

0.682
  recA Acinetobacter baylyi ADP1

69.275

96.1

0.666
  recA Pseudomonas stutzeri DSM 10701

73.065

89.972

0.657
  recA Vibrio cholerae strain A1552

72.36

89.694

0.649
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.36

89.694

0.649
  recA Acinetobacter baumannii D1279779

66.957

96.1

0.643
  recA Glaesserella parasuis strain SC1401

70.807

89.694

0.635
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.569

93.036

0.61
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.307

94.429

0.607
  recA Helicobacter pylori 26695

64.759

92.479

0.599
  recA Helicobacter pylori strain NCTC11637

64.759

92.479

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

66.149

89.694

0.593
  recA Latilactobacillus sakei subsp. sakei 23K

61.516

95.543

0.588
  recA Streptococcus mitis NCTC 12261

57.618

100

0.579
  recA Streptococcus mitis SK321

57.778

100

0.579
  recA Streptococcus pneumoniae TIGR4

57.955

98.05

0.568
  recA Streptococcus pneumoniae R6

57.955

98.05

0.568
  recA Streptococcus pneumoniae Rx1

57.955

98.05

0.568
  recA Streptococcus pneumoniae D39

57.955

98.05

0.568
  recA Lactococcus lactis subsp. cremoris KW2

60.597

93.315

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.944

94.986

0.56
  recA Streptococcus pyogenes NZ131

58.651

94.986

0.557
  recA Streptococcus mutans UA159

59.104

93.315

0.552