Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   LVJ83_RS09480 Genome accession   NZ_CP091508
Coordinates   2055176..2056915 (-) Length   579 a.a.
NCBI ID   WP_244784262.1    Uniprot ID   -
Organism   Uruburuella testudinis strain CCUG 63373m     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2050176..2061915
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ83_RS09460 (LVJ83_09460) - 2051076..2051819 (-) 744 WP_244784258.1 UDP-2,3-diacylglucosamine diphosphatase -
  LVJ83_RS09465 (LVJ83_09465) - 2051832..2052182 (-) 351 WP_244784259.1 arsenate reductase -
  LVJ83_RS09470 (LVJ83_09470) - 2052338..2052985 (+) 648 WP_244784260.1 hypothetical protein -
  LVJ83_RS09475 (LVJ83_09475) - 2053113..2054741 (+) 1629 WP_244784261.1 YdgA family protein -
  LVJ83_RS09480 (LVJ83_09480) recD 2055176..2056915 (-) 1740 WP_244784262.1 exodeoxyribonuclease V subunit alpha Machinery gene
  LVJ83_RS09485 (LVJ83_09485) recA 2057492..2058571 (+) 1080 WP_244784263.1 recombinase RecA Machinery gene
  LVJ83_RS09490 (LVJ83_09490) trpE 2059382..2060857 (+) 1476 WP_244784264.1 anthranilate synthase component I -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 62425.39 Da        Isoelectric Point: 5.8512

>NTDB_id=651793 LVJ83_RS09480 WP_244784262.1 2055176..2056915(-) (recD) [Uruburuella testudinis strain CCUG 63373m]
MSAISVEAYQAAADAAVMLLQRHAPQAAGCAAPYLPRLFAALSDGHSFIWLDEAEAAALAAAQPVVGSGGDTPLVLAGRR
LFLGRMWQLERDLAAEIVRLAKAPLAPADWMRAGRNLQDWFAGQGSEGQRDAAALALLQPFMLISGGPGTGKTTTVAKLL
GLLCDGEAQMPSIALAAPTGKAAAHMARALHRALADFDLSEPVRSHLLQLEGQTVHRLLKLRPPQMRPLFDAEQPLALDV
LIVDEASMLDIALLLQLLRAVPTGCRVVLLGDENQLPSVGAGAVLAALAQPTLLGEDTARELQAMLPQHGFQTAALPLPL
SQNVARLKVSHRFGDNSGIGCLARAVAAEDVSAVWAAFDRFPDDLQLRERGSREQAEAIYALQADYWQAVDAGDVAQAFA
RQTDVVVLAAWRDDAEAFNQAYRRCLQQHGRVRADAPWFAGQVLMIERNDYALNVFNGDIGLVLPDEEGVLSAWFAAAQG
YRKIPLSRLSSYATAFAMTVHKSQGSEYRDVWLLPPSVTMPSESGGGLNKALLYTAVTRARERFVFWGSRAAFQTACTAD
EQRRSSLREMIGRAWGGEL

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=651793 LVJ83_RS09480 WP_244784262.1 2055176..2056915(-) (recD) [Uruburuella testudinis strain CCUG 63373m]
ATGTCTGCCATTTCTGTTGAAGCTTATCAGGCTGCTGCCGATGCGGCGGTGATGTTGTTGCAACGCCATGCGCCACAGGC
GGCCGGGTGTGCCGCACCGTATCTGCCGCGTTTGTTTGCCGCGCTTTCAGACGGCCATTCGTTTATTTGGTTGGACGAGG
CGGAAGCAGCGGCGCTGGCTGCGGCTCAACCGGTGGTCGGCAGTGGCGGCGACACGCCGTTGGTGCTGGCGGGCAGACGT
TTGTTTTTGGGGCGTATGTGGCAGCTTGAGCGTGATTTGGCGGCGGAAATCGTGCGCTTGGCCAAAGCGCCGCTTGCGCC
GGCAGACTGGATGCGGGCGGGGCGGAATTTGCAGGATTGGTTTGCCGGCCAAGGCAGCGAAGGGCAGCGCGATGCAGCGG
CGTTGGCGCTGTTGCAGCCTTTTATGCTGATCAGCGGCGGCCCGGGTACGGGCAAGACCACGACGGTGGCCAAGCTGTTG
GGGTTGTTGTGCGATGGTGAGGCGCAGATGCCGAGTATTGCGCTGGCCGCGCCCACCGGCAAGGCGGCGGCGCATATGGC
GCGTGCGCTGCATCGTGCGCTGGCTGATTTTGATCTGTCTGAGCCGGTGCGCAGCCATTTGTTGCAGCTGGAGGGGCAGA
CTGTGCACCGGTTGTTGAAACTGCGCCCGCCGCAGATGCGCCCGCTATTTGACGCCGAGCAGCCGTTGGCGTTGGATGTT
TTGATTGTCGATGAAGCTTCGATGTTGGATATCGCGCTGCTGTTGCAGTTGCTGCGGGCGGTACCCACCGGCTGCCGGGT
GGTATTGCTGGGCGATGAAAACCAGCTGCCTTCTGTGGGCGCCGGCGCGGTGCTGGCGGCGCTGGCGCAGCCGACACTGC
TGGGTGAAGATACGGCGCGCGAATTGCAGGCGATGTTGCCGCAACATGGTTTTCAGACGGCCGCGCTGCCCTTGCCTTTG
TCGCAAAATGTGGCGCGCTTAAAGGTCAGCCACCGTTTCGGCGACAACAGCGGCATCGGTTGTTTGGCACGCGCGGTGGC
GGCGGAGGATGTCTCGGCGGTGTGGGCTGCGTTTGACCGTTTTCCTGATGATTTGCAGCTGCGCGAGCGTGGCAGCCGCG
AACAGGCCGAGGCGATCTATGCTTTGCAGGCGGATTATTGGCAGGCGGTGGATGCGGGCGATGTGGCGCAGGCGTTTGCC
CGGCAAACTGATGTGGTGGTGTTGGCGGCGTGGCGCGATGATGCCGAAGCGTTTAATCAGGCCTACCGCCGCTGTTTGCA
ACAGCATGGCCGAGTGCGTGCTGATGCGCCGTGGTTTGCCGGGCAGGTGCTGATGATTGAGCGCAACGATTATGCGCTGA
ATGTGTTTAACGGCGACATCGGTTTGGTGTTGCCGGATGAGGAGGGCGTGTTGTCTGCCTGGTTTGCCGCCGCGCAAGGC
TACCGTAAAATTCCGCTCAGCCGCTTGAGCAGCTATGCTACGGCGTTTGCAATGACGGTGCACAAAAGCCAGGGTTCGGA
ATATCGTGATGTGTGGCTGTTGCCGCCTTCTGTGACGATGCCGTCTGAAAGCGGCGGCGGGCTGAATAAGGCGCTGCTGT
ATACGGCGGTTACCCGTGCCCGTGAGCGGTTTGTGTTTTGGGGCAGCCGGGCGGCGTTTCAGACGGCCTGCACGGCTGAC
GAACAGCGGCGCAGCAGCTTGCGGGAGATGATAGGGCGGGCGTGGGGCGGGGAGCTCTAG

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(495-543)

AAA domain (AAA_30)

(126-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

57.746

98.1

0.566