Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L1879_RS00820 Genome accession   NZ_CP091131
Coordinates   168321..169388 (-) Length   355 a.a.
NCBI ID   WP_258921649.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain TM3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 163321..174388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1879_RS00800 - 163650..164561 (-) 912 WP_061566937.1 peptidase U32 family protein -
  L1879_RS00805 spoVS 164763..165023 (-) 261 WP_013859169.1 stage V sporulation protein SpoVS -
  L1879_RS00810 - 165397..166197 (-) 801 WP_013859168.1 TIGR00282 family metallophosphoesterase -
  L1879_RS00815 rny 166284..167846 (-) 1563 WP_013859167.1 ribonuclease Y -
  L1879_RS00820 recA 168321..169388 (-) 1068 WP_258921649.1 recombinase RecA Machinery gene
  L1879_RS00825 cinA 169656..170888 (-) 1233 WP_258921650.1 competence/damage-inducible protein A Machinery gene
  L1879_RS00830 pgsA 171060..171638 (-) 579 WP_019721121.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  L1879_RS00835 - 171694..172596 (-) 903 WP_258921651.1 RodZ family helix-turn-helix domain-containing protein -
  L1879_RS00840 - 172613..173404 (-) 792 WP_017554614.1 DUF3388 domain-containing protein -
  L1879_RS00845 - 173596..173856 (-) 261 WP_013859159.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38417.43 Da        Isoelectric Point: 4.7450

>NTDB_id=647913 L1879_RS00820 WP_258921649.1 168321..169388(-) (recA) [Heyndrickxia coagulans strain TM3]
MNDRQQALDQALKQIEKQFGKGSIMRLGEQTDRVVSTIPTGSLALDIALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQAQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPRAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSNTIAIFINQIREKVGVMFGNPEVTPGGRALKFYSSVRLEVRRAEQIKQGSDIVGNKT
KIKVVKNKVAPPFKTAEVDIMYGEGISKEGEIVDMGSDLDIIQKSGAWYAYNGERLGQGRENAKQFLKENAELKNEIAAK
IREHYDLAEDAGSHENEKAADEKEAVEGQEELNLE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=647913 L1879_RS00820 WP_258921649.1 168321..169388(-) (recA) [Heyndrickxia coagulans strain TM3]
GTGAATGATCGTCAACAAGCCTTAGACCAGGCTCTGAAACAAATAGAAAAGCAATTTGGCAAGGGTTCCATTATGCGGCT
GGGCGAGCAGACCGACCGGGTTGTCTCCACGATCCCGACCGGTTCGCTTGCGCTTGATATTGCCCTTGGTGTCGGCGGCT
ATCCGCGCGGCCGCGTCATTGAAATATACGGCCCTGAAAGTTCCGGTAAAACAACGGTTGCCCTGCATGCGATTGCGGAA
GTCCAGGCACAGGGCGGACAGGCTGCCTTTATTGATGCGGAACACGCACTTGACCCGGTTTATGCCCAAAAGCTCGGTGT
CAACATTGATGAACTGCTCCTGTCCCAGCCGGATACGGGCGAACAGGCGCTGGAAATTGCAGAAGCGCTCGTCCGTAGCG
GCGCAGTGGACATTATTGTCGTTGACTCTGTTGCTGCGCTTGTGCCGCGAGCGGAAATTGAAGGAGAAATGGGCGATTCC
CATGTCGGCCTCCAGGCACGGCTGATGTCCCAGGCGCTGCGGAAATTATCGGGCGCGATCAACAAATCAAACACGATTGC
GATTTTCATTAACCAGATCCGGGAAAAAGTCGGCGTGATGTTCGGCAATCCTGAAGTCACACCGGGCGGACGCGCGCTCA
AATTTTACTCGTCCGTGCGCCTTGAAGTGCGCCGCGCCGAACAGATCAAACAAGGGAGTGACATTGTCGGCAACAAAACG
AAAATCAAGGTTGTCAAAAACAAAGTAGCGCCTCCGTTTAAAACGGCAGAAGTGGATATTATGTACGGCGAAGGGATCTC
AAAAGAAGGCGAGATCGTCGATATGGGAAGCGACCTTGACATCATCCAAAAAAGCGGGGCCTGGTATGCTTATAACGGCG
AGCGGCTCGGCCAGGGGCGTGAAAATGCGAAACAGTTTTTAAAGGAAAATGCGGAACTGAAAAATGAGATTGCCGCAAAA
ATCCGGGAACATTACGACCTGGCGGAAGATGCCGGTTCCCATGAAAACGAAAAAGCTGCAGATGAAAAGGAAGCTGTGGA
AGGACAGGAAGAATTGAATTTGGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.239

92.113

0.794
  recA Latilactobacillus sakei subsp. sakei 23K

73.9

96.056

0.71
  recA Streptococcus pneumoniae D39

66.759

100

0.679
  recA Streptococcus pneumoniae Rx1

66.759

100

0.679
  recA Streptococcus pneumoniae R6

66.759

100

0.679
  recA Streptococcus pneumoniae TIGR4

66.759

100

0.679
  recA Streptococcus mitis SK321

67.039

100

0.676
  recA Streptococcus mitis NCTC 12261

67.039

100

0.676
  recA Streptococcus mutans UA159

68.571

98.592

0.676
  recA Streptococcus pyogenes NZ131

70.732

92.394

0.654
  recA Lactococcus lactis subsp. cremoris KW2

66.967

93.803

0.628
  recA Neisseria gonorrhoeae MS11

66.77

90.704

0.606
  recA Neisseria gonorrhoeae MS11

66.77

90.704

0.606
  recA Neisseria gonorrhoeae strain FA1090

66.77

90.704

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.667

90.423

0.603
  recA Vibrio cholerae strain A1552

66.667

90.423

0.603
  recA Ralstonia pseudosolanacearum GMI1000

68.71

87.324

0.6
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.415

92.394

0.586
  recA Acinetobacter baumannii D1279779

64.596

90.704

0.586
  recA Glaesserella parasuis strain SC1401

60.704

96.056

0.583
  recA Acinetobacter baylyi ADP1

63.777

90.986

0.58
  recA Helicobacter pylori 26695

63.665

90.704

0.577
  recA Helicobacter pylori strain NCTC11637

63.665

90.704

0.577
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.665

90.704

0.577
  recA Pseudomonas stutzeri DSM 10701

63.75

90.141

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.875

90.141

0.558