Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   L1879_RS00825 Genome accession   NZ_CP091131
Coordinates   169656..170888 (-) Length   410 a.a.
NCBI ID   WP_258921650.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain TM3     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 164656..175888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1879_RS00805 spoVS 164763..165023 (-) 261 WP_013859169.1 stage V sporulation protein SpoVS -
  L1879_RS00810 - 165397..166197 (-) 801 WP_013859168.1 TIGR00282 family metallophosphoesterase -
  L1879_RS00815 rny 166284..167846 (-) 1563 WP_013859167.1 ribonuclease Y -
  L1879_RS00820 recA 168321..169388 (-) 1068 WP_258921649.1 recombinase RecA Machinery gene
  L1879_RS00825 cinA 169656..170888 (-) 1233 WP_258921650.1 competence/damage-inducible protein A Machinery gene
  L1879_RS00830 pgsA 171060..171638 (-) 579 WP_019721121.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  L1879_RS00835 - 171694..172596 (-) 903 WP_258921651.1 RodZ family helix-turn-helix domain-containing protein -
  L1879_RS00840 - 172613..173404 (-) 792 WP_017554614.1 DUF3388 domain-containing protein -
  L1879_RS00845 - 173596..173856 (-) 261 WP_013859159.1 DUF3243 domain-containing protein -
  L1879_RS00850 - 174052..174774 (-) 723 WP_026104883.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44856.52 Da        Isoelectric Point: 5.7068

>NTDB_id=647914 L1879_RS00825 WP_258921650.1 169656..170888(-) (cinA) [Heyndrickxia coagulans strain TM3]
MNAEIIAVGSELLLGQITNTNATFIAAQLAEIGVDVYYQTVVGDNAERLEAAIRTAEGRADLLIFTGGLGPTKDDLTKET
IASHIGKKLVTDEDAMRSIEQFFIRTKRKMTENNKKQALVIEGSKVFPNDHGMAPGMLAKSRNHYYMLLPGPPHELEPMF
IHYASPAIQDELETIEKIESRVLRFFGIGESQLETEIRQILETQSNPTVAPLAKEGEVTLRITAKHQSVATANQMIDQVE
KEILQIAGSYFYGYNDTTLMEALLEKLSEKQLTLACAESLTAGKFAAEMASIQGVSTMLKGGVVVYSNEAKMKLAKVKKE
TLDKYGAVSSQCAKELAENIRSIMDADIGISFTGVAGPDSLEGHPPGTVWIGIAIKGKETAAYLLELSGSRNNVRTRSVK
YGCWHLLKLL

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=647914 L1879_RS00825 WP_258921650.1 169656..170888(-) (cinA) [Heyndrickxia coagulans strain TM3]
GTGAATGCCGAAATAATTGCAGTCGGTTCGGAACTTTTGCTTGGCCAGATCACCAATACAAACGCCACATTTATTGCCGC
GCAATTGGCGGAAATCGGCGTGGATGTGTACTATCAGACCGTTGTCGGCGATAACGCAGAGCGGCTCGAAGCGGCAATCC
GTACAGCGGAGGGCCGCGCCGATTTATTGATTTTTACTGGCGGGCTCGGTCCGACAAAGGATGATTTAACAAAAGAAACG
ATTGCATCGCATATCGGAAAAAAACTGGTCACAGACGAAGATGCCATGCGTTCCATCGAACAGTTTTTTATCCGTACAAA
ACGAAAAATGACGGAAAACAACAAAAAGCAGGCGCTTGTCATTGAAGGCTCGAAAGTGTTTCCGAATGACCACGGCATGG
CGCCGGGCATGCTGGCCAAAAGCCGAAACCACTATTACATGCTGCTCCCCGGCCCGCCGCATGAACTGGAACCGATGTTT
ATCCATTATGCCAGTCCCGCGATCCAGGATGAACTGGAAACGATCGAAAAAATCGAATCGCGCGTTCTCCGTTTCTTCGG
GATCGGCGAATCCCAACTGGAAACAGAAATCCGCCAAATATTGGAAACCCAGAGCAATCCGACTGTTGCTCCGCTTGCGA
AAGAAGGGGAAGTGACACTCAGGATTACGGCGAAACACCAGTCGGTGGCAACGGCGAACCAAATGATCGATCAAGTGGAA
AAAGAGATTTTGCAAATTGCCGGATCGTATTTTTACGGTTATAACGATACGACGTTAATGGAGGCCCTGCTTGAAAAACT
TTCAGAAAAACAGCTGACGCTGGCCTGCGCGGAAAGCCTGACTGCCGGCAAATTTGCAGCGGAAATGGCGTCCATCCAGG
GTGTGAGCACGATGCTGAAAGGCGGCGTTGTTGTCTATTCGAACGAAGCGAAGATGAAGCTTGCCAAAGTGAAAAAAGAA
ACACTTGACAAGTACGGCGCCGTCAGCAGCCAGTGTGCAAAAGAACTGGCGGAAAATATCCGCAGCATCATGGATGCCGA
CATTGGCATCAGTTTTACAGGTGTGGCCGGCCCGGACTCCCTTGAAGGCCATCCGCCGGGAACCGTGTGGATCGGCATTG
CCATAAAAGGGAAAGAAACGGCCGCCTATCTGTTGGAACTTTCCGGATCCCGGAACAACGTCCGCACGAGATCGGTGAAA
TACGGCTGCTGGCATTTGCTGAAACTGCTTTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

56.618

99.512

0.563
  cinA Streptococcus pneumoniae TIGR4

46.651

100

0.476
  cinA Streptococcus mitis SK321

46.411

100

0.473
  cinA Streptococcus pneumoniae R6

46.172

100

0.471
  cinA Streptococcus pneumoniae Rx1

46.172

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.172

100

0.471
  cinA Streptococcus pneumoniae D39

45.933

100

0.468
  cinA Streptococcus mutans UA159

45.113

97.317

0.439
  cinA Streptococcus suis isolate S10

39.683

92.195

0.366