Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L1999_RS08875 Genome accession   NZ_CP091110
Coordinates   1898633..1899676 (+) Length   347 a.a.
NCBI ID   WP_275677474.1    Uniprot ID   -
Organism   Neobacillus drentensis strain JC05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1893633..1904676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1999_RS08850 (L1999_08850) - 1893862..1894119 (+) 258 WP_235743200.1 DUF3243 domain-containing protein -
  L1999_RS08855 (L1999_08855) - 1894307..1895095 (+) 789 WP_215040815.1 DUF3388 domain-containing protein -
  L1999_RS08860 (L1999_08860) - 1895116..1896012 (+) 897 WP_235743201.1 RodZ domain-containing protein -
  L1999_RS08865 (L1999_08865) pgsA 1896064..1896648 (+) 585 WP_235743202.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  L1999_RS08870 (L1999_08870) cinA 1896678..1897931 (+) 1254 WP_235743203.1 competence/damage-inducible protein A Machinery gene
  L1999_RS08875 (L1999_08875) recA 1898633..1899676 (+) 1044 WP_275677474.1 recombinase RecA Machinery gene
  L1999_RS08880 (L1999_08880) rny 1899996..1901555 (+) 1560 WP_215040820.1 ribonuclease Y -
  L1999_RS08885 (L1999_08885) - 1901668..1902465 (+) 798 WP_235743204.1 TIGR00282 family metallophosphoesterase -
  L1999_RS08890 (L1999_08890) spoVS 1902694..1902954 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37754.03 Da        Isoelectric Point: 5.1103

>NTDB_id=647781 L1999_RS08875 WP_275677474.1 1898633..1899676(+) (recA) [Neobacillus drentensis strain JC05]
MSDRKAALEMALKQIEKQFGKGSIMKMGEKTETRIQTVPSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQAKGGQAAFIDAEHALDPTYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTVRLEVRRAETLKQGTEMVGNRT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIVDLGSELDIVQKSGSWYSYNNERVGQGRENAKLFLKENTETRDAISQK
IREHFGLDGEKVVTESEDEDEQINLLE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=647781 L1999_RS08875 WP_275677474.1 1898633..1899676(+) (recA) [Neobacillus drentensis strain JC05]
GTGAGTGACCGTAAGGCCGCCTTAGAAATGGCGTTAAAGCAAATAGAAAAACAATTCGGTAAAGGTTCCATTATGAAAAT
GGGAGAAAAAACCGAAACAAGAATACAAACTGTTCCGAGCGGCTCCTTAGCACTTGATGTGGCACTTGGAGTGGGCGGAT
ACCCTAGAGGACGTATTATTGAAATTTATGGCCCAGAAAGTTCTGGTAAAACAACCGTTGCCCTTCATGCAATTGCAGAA
GTACAAGCAAAAGGCGGACAAGCTGCGTTTATCGATGCCGAGCACGCGCTTGATCCAACCTATGCACAAAAACTTGGTGT
TAACATTGATGAATTACTATTATCACAACCTGACACAGGTGAACAGGCACTTGAAATCGCTGAAGCTTTAGTACGAAGCG
GTGCAGTTGATATTATTGTCATTGACTCCGTTGCTGCACTAGTTCCTAAAGCAGAAATTGAAGGCGAAATGGGTGACGCA
CACGTAGGTTTACAAGCCCGCTTAATGTCGCAAGCCCTTCGTAAACTATCAGGGGCGATCAATAAATCTAAAACAATCGC
AATCTTTATTAACCAGATTCGTGAGAAAGTAGGAATCATGTTCGGAAATCCCGAGACGACACCTGGTGGTCGGGCCCTAA
AGTTCTATTCCACTGTCCGTCTTGAAGTGCGCCGTGCTGAAACTTTAAAGCAAGGCACGGAAATGGTTGGTAACAGAACC
AAAATTAAAGTCGTAAAGAACAAAGTAGCACCCCCATTCCGTACGGCTGAAGTGGATATTATGTATGGAGAAGGTATCTC
TAAAGAAGGCGAAATCGTCGATCTAGGTTCTGAATTAGATATCGTTCAAAAAAGCGGTTCATGGTACTCCTATAATAATG
AAAGAGTTGGCCAAGGCCGTGAAAATGCGAAGTTATTCTTAAAAGAAAATACTGAAACCCGAGATGCAATCAGCCAAAAA
ATCCGTGAACACTTCGGTTTAGATGGGGAAAAGGTTGTAACGGAATCAGAAGATGAAGATGAACAGATTAATTTATTAGA
ATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.087

95.965

0.836
  recA Latilactobacillus sakei subsp. sakei 23K

74.419

99.135

0.738
  recA Streptococcus mitis NCTC 12261

66.667

100

0.669
  recA Streptococcus mitis SK321

66.379

100

0.666
  recA Streptococcus pneumoniae TIGR4

68.452

96.83

0.663
  recA Streptococcus pneumoniae R6

68.452

96.83

0.663
  recA Streptococcus pneumoniae Rx1

68.452

96.83

0.663
  recA Streptococcus pneumoniae D39

68.452

96.83

0.663
  recA Streptococcus mutans UA159

68.997

94.813

0.654
  recA Streptococcus pyogenes NZ131

67.988

94.524

0.643
  recA Ralstonia pseudosolanacearum GMI1000

67.89

94.236

0.64
  recA Lactococcus lactis subsp. cremoris KW2

65.758

95.101

0.625
  recA Neisseria gonorrhoeae strain FA1090

64.848

95.101

0.617
  recA Neisseria gonorrhoeae MS11

64.848

95.101

0.617
  recA Neisseria gonorrhoeae MS11

64.848

95.101

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.537

97.695

0.611
  recA Acinetobacter baumannii D1279779

60.29

99.424

0.599
  recA Glaesserella parasuis strain SC1401

61.176

97.983

0.599
  recA Acinetobacter baylyi ADP1

59.195

100

0.594
  recA Helicobacter pylori 26695

63.077

93.66

0.591
  recA Helicobacter pylori strain NCTC11637

63.077

93.66

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.31

94.813

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.158

93.084

0.588
  recA Vibrio cholerae strain A1552

63.158

93.084

0.588
  recA Pseudomonas stutzeri DSM 10701

63.75

92.219

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60

93.66

0.562