Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   L1999_RS08870 Genome accession   NZ_CP091110
Coordinates   1896678..1897931 (+) Length   417 a.a.
NCBI ID   WP_235743203.1    Uniprot ID   -
Organism   Neobacillus drentensis strain JC05     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1891678..1902931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1999_RS08845 (L1999_08845) - 1893056..1893778 (+) 723 WP_235743199.1 SDR family oxidoreductase -
  L1999_RS08850 (L1999_08850) - 1893862..1894119 (+) 258 WP_235743200.1 DUF3243 domain-containing protein -
  L1999_RS08855 (L1999_08855) - 1894307..1895095 (+) 789 WP_215040815.1 DUF3388 domain-containing protein -
  L1999_RS08860 (L1999_08860) - 1895116..1896012 (+) 897 WP_235743201.1 RodZ domain-containing protein -
  L1999_RS08865 (L1999_08865) pgsA 1896064..1896648 (+) 585 WP_235743202.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  L1999_RS08870 (L1999_08870) cinA 1896678..1897931 (+) 1254 WP_235743203.1 competence/damage-inducible protein A Machinery gene
  L1999_RS08875 (L1999_08875) recA 1898633..1899676 (+) 1044 WP_275677474.1 recombinase RecA Machinery gene
  L1999_RS08880 (L1999_08880) rny 1899996..1901555 (+) 1560 WP_215040820.1 ribonuclease Y -
  L1999_RS08885 (L1999_08885) - 1901668..1902465 (+) 798 WP_235743204.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45064.54 Da        Isoelectric Point: 5.0882

>NTDB_id=647780 L1999_RS08870 WP_235743203.1 1896678..1897931(+) (cinA) [Neobacillus drentensis strain JC05]
MKNAEIIAVGSELLLGQIVNTNAKFISQQLAELGINVYFHTVVGDNPDRLLSAIKTAEGRANIIIFTGGLGPTKDDLTKE
TIARHLSKNLVIDQQALVSIEQYFARTSRVMTENNRKQALVLEGAHILPNDHGMAPGMVLETNGNTYMLLPGPPKEMEPM
FQHYGCPALASKDVANEKIVSRVLRFFGIGEAALETEIIDIIDAQSNPTIAPLAGDGEVTLRLTAKHEDEDVAQSMLDEV
EKTISQRVGQYIYGYDQTSLFAELTKVLKERNLTITAAESLTGGLFQKELTSIAGVSSVYKGGVVCYSNEVKHKILQVKQ
ETLDNEGAVSEQCAVELAENTASLVGAAIGISFTGVAGPDELEGKPVGTVYIGVALKGRPTIVEKLTLGGTREAIRNRAV
KYGCYFVLKTLKESQNA

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=647780 L1999_RS08870 WP_235743203.1 1896678..1897931(+) (cinA) [Neobacillus drentensis strain JC05]
TTGAAGAATGCTGAAATCATTGCAGTAGGTTCGGAGTTATTGCTCGGGCAAATTGTCAACACCAATGCGAAATTTATTTC
ACAGCAATTAGCGGAGCTTGGCATTAATGTCTATTTTCATACCGTTGTGGGGGACAACCCTGACAGGCTGCTATCTGCCA
TTAAAACAGCAGAAGGCCGAGCGAACATCATTATCTTTACCGGTGGGTTGGGACCAACCAAGGATGATTTAACCAAGGAA
ACAATTGCCCGTCACCTAAGTAAAAATCTGGTGATCGACCAACAGGCATTAGTGTCGATTGAGCAATATTTCGCACGGAC
CAGTCGTGTGATGACGGAAAATAATCGTAAGCAGGCATTGGTATTAGAAGGCGCGCATATTCTTCCAAATGACCACGGTA
TGGCTCCTGGAATGGTACTGGAGACAAACGGTAACACGTATATGCTTTTACCTGGCCCTCCAAAGGAAATGGAACCGATG
TTTCAGCATTATGGCTGCCCGGCCCTGGCCTCTAAGGATGTGGCGAATGAGAAAATTGTTTCTAGGGTGCTGCGTTTCTT
TGGAATCGGGGAAGCGGCATTGGAAACGGAAATTATCGATATCATAGATGCACAGAGTAATCCTACGATTGCCCCGCTTG
CCGGCGATGGGGAAGTGACCCTGCGCCTAACGGCAAAACACGAGGATGAGGATGTTGCCCAGTCGATGCTGGATGAAGTG
GAAAAGACAATTAGTCAACGTGTTGGTCAGTATATCTATGGATATGATCAAACTTCATTATTTGCTGAATTGACGAAAGT
ATTAAAAGAACGAAACCTAACGATTACGGCTGCGGAGAGTTTAACCGGGGGCTTGTTCCAGAAGGAGTTAACCTCGATTG
CCGGTGTAAGTTCTGTTTATAAAGGTGGAGTGGTTTGCTATTCAAATGAAGTAAAGCACAAGATTTTGCAAGTGAAACAG
GAAACGCTTGACAATGAAGGTGCGGTCAGTGAACAGTGTGCGGTAGAGCTTGCGGAAAATACGGCTTCGTTAGTAGGCGC
TGCTATTGGGATCAGTTTCACGGGTGTAGCAGGTCCGGATGAGCTAGAAGGAAAGCCGGTAGGCACGGTTTATATAGGGG
TTGCGCTTAAGGGAAGACCGACGATAGTGGAAAAGCTTACTCTTGGAGGAACAAGGGAAGCAATCCGCAATCGTGCGGTG
AAATATGGTTGTTATTTTGTCTTGAAAACGTTAAAAGAATCACAGAATGCTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Competence-damaged protein (CinA)

(259-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.709

98.801

0.59
  cinA Streptococcus mitis SK321

48.21

100

0.484
  cinA Streptococcus pneumoniae TIGR4

48.086

100

0.482
  cinA Streptococcus mitis NCTC 12261

47.733

100

0.48
  cinA Streptococcus pneumoniae Rx1

47.847

100

0.48
  cinA Streptococcus pneumoniae R6

47.847

100

0.48
  cinA Streptococcus pneumoniae D39

47.608

100

0.477
  cinA Streptococcus mutans UA159

46.89

100

0.47
  cinA Streptococcus suis isolate S10

40

99.52

0.398