Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | KB230_RS07130 | Genome accession | NZ_CP090922 |
| Coordinates | 1529234..1530283 (-) | Length | 349 a.a. |
| NCBI ID | WP_002439552.1 | Uniprot ID | A0A0Q1CVH7 |
| Organism | Staphylococcus epidermidis strain 45A6 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1526820..1603156 | 1529234..1530283 | within | 0 |
Gene organization within MGE regions
Location: 1526820..1603156
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KB230_RS07120 (KB230_07120) | - | 1527146..1527361 (+) | 216 | WP_002439555.1 | hypothetical protein | - |
| KB230_RS07125 (KB230_07125) | rny | 1527449..1529008 (-) | 1560 | WP_001829512.1 | ribonuclease Y | - |
| KB230_RS07130 (KB230_07130) | recA | 1529234..1530283 (-) | 1050 | WP_002439552.1 | recombinase RecA | Machinery gene |
| KB230_RS07135 (KB230_07135) | - | 1530454..1531599 (-) | 1146 | WP_002439549.1 | CinA family nicotinamide mononucleotide deamidase-related protein | - |
| KB230_RS07140 (KB230_07140) | pgsA | 1532052..1532633 (-) | 582 | WP_002503396.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| KB230_RS07145 (KB230_07145) | - | 1532662..1533054 (-) | 393 | WP_001832565.1 | helix-turn-helix domain-containing protein | - |
| KB230_RS07150 (KB230_07150) | - | 1533073..1533900 (-) | 828 | WP_002456221.1 | YmfK family protein | - |
| KB230_RS07155 (KB230_07155) | ymfI | 1534053..1534757 (-) | 705 | WP_002439542.1 | elongation factor P 5-aminopentanone reductase | - |
| KB230_RS07160 (KB230_07160) | yfmH | 1534754..1536043 (-) | 1290 | WP_234966970.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| KB230_RS07165 (KB230_07165) | yfmF | 1536043..1537314 (-) | 1272 | WP_002439538.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| KB230_RS07170 (KB230_07170) | - | 1537345..1538058 (-) | 714 | WP_002439536.1 | GntR family transcriptional regulator | - |
| KB230_RS07175 (KB230_07175) | - | 1538061..1540454 (-) | 2394 | WP_234966971.1 | DNA translocase FtsK | - |
| KB230_RS07180 (KB230_07180) | rnjB | 1540720..1542393 (-) | 1674 | WP_002457357.1 | ribonuclease J2 | - |
| KB230_RS07185 (KB230_07185) | pnp | 1542761..1544866 (-) | 2106 | WP_234966972.1 | polyribonucleotide nucleotidyltransferase | - |
| KB230_RS07190 (KB230_07190) | rpsO | 1544998..1545267 (-) | 270 | WP_002439528.1 | 30S ribosomal protein S15 | - |
| KB230_RS07195 (KB230_07195) | - | 1545387..1546358 (-) | 972 | WP_001832563.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| KB230_RS07200 (KB230_07200) | truB | 1546374..1547291 (-) | 918 | WP_234966973.1 | tRNA pseudouridine(55) synthase TruB | - |
| KB230_RS07205 (KB230_07205) | rbfA | 1547429..1547779 (-) | 351 | WP_002457359.1 | 30S ribosome-binding factor RbfA | - |
| KB230_RS07210 (KB230_07210) | infB | 1548082..1550244 (-) | 2163 | WP_002468903.1 | translation initiation factor IF-2 | - |
| KB230_RS07215 (KB230_07215) | - | 1550249..1550566 (-) | 318 | WP_002439520.1 | YlxQ family RNA-binding protein | - |
| KB230_RS07220 (KB230_07220) | rnpM | 1550566..1550850 (-) | 285 | WP_001829465.1 | RNase P modulator RnpM | - |
| KB230_RS07225 (KB230_07225) | nusA | 1550868..1552091 (-) | 1224 | WP_001829457.1 | transcription termination factor NusA | - |
| KB230_RS07230 (KB230_07230) | rimP | 1552112..1552579 (-) | 468 | WP_002439519.1 | ribosome maturation factor RimP | - |
| KB230_RS07235 (KB230_07235) | - | 1552758..1557068 (-) | 4311 | WP_233662769.1 | PolC-type DNA polymerase III | - |
| KB230_RS07240 (KB230_07240) | - | 1557319..1559022 (-) | 1704 | WP_001829513.1 | proline--tRNA ligase | - |
| KB230_RS07245 (KB230_07245) | rseP | 1559041..1560327 (-) | 1287 | WP_234966974.1 | RIP metalloprotease RseP | - |
| KB230_RS07250 (KB230_07250) | - | 1560561..1561343 (-) | 783 | WP_001829499.1 | phosphatidate cytidylyltransferase | - |
| KB230_RS07255 (KB230_07255) | - | 1561347..1562117 (-) | 771 | WP_001832561.1 | isoprenyl transferase | - |
| KB230_RS07260 (KB230_07260) | frr | 1562338..1562892 (-) | 555 | WP_001829472.1 | ribosome recycling factor | - |
| KB230_RS07265 (KB230_07265) | pyrH | 1562909..1563631 (-) | 723 | WP_002439511.1 | UMP kinase | - |
| KB230_RS07270 (KB230_07270) | tsf | 1563772..1564650 (-) | 879 | WP_002439509.1 | translation elongation factor Ts | - |
| KB230_RS07275 (KB230_07275) | rpsB | 1564802..1565590 (-) | 789 | WP_001832557.1 | 30S ribosomal protein S2 | - |
| KB230_RS07280 (KB230_07280) | codY | 1565949..1566722 (-) | 774 | WP_002446289.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| KB230_RS07285 (KB230_07285) | hslU | 1566746..1568149 (-) | 1404 | WP_001829474.1 | ATP-dependent protease ATPase subunit HslU | - |
| KB230_RS07290 (KB230_07290) | hslV | 1568218..1568760 (-) | 543 | WP_001829498.1 | ATP-dependent protease subunit HslV | - |
| KB230_RS07295 (KB230_07295) | xerC | 1568764..1569624 (-) | 861 | WP_002439503.1 | tyrosine recombinase XerC | - |
| KB230_RS07300 (KB230_07300) | trmFO | 1569879..1571186 (-) | 1308 | WP_234966975.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| KB230_RS07305 (KB230_07305) | topA | 1571211..1573280 (-) | 2070 | WP_001829508.1 | type I DNA topoisomerase | - |
| KB230_RS07310 (KB230_07310) | dprA | 1573463..1574335 (-) | 873 | WP_234966976.1 | DNA-processing protein DprA | Machinery gene |
| KB230_RS07320 (KB230_07320) | sucD | 1575141..1576049 (-) | 909 | WP_002446283.1 | succinate--CoA ligase subunit alpha | - |
| KB230_RS07325 (KB230_07325) | sucC | 1576071..1577237 (-) | 1167 | WP_002439496.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| KB230_RS07330 (KB230_07330) | - | 1577345..1578115 (-) | 771 | WP_001829514.1 | ribonuclease HII | - |
| KB230_RS07335 (KB230_07335) | ylqF | 1578120..1578983 (-) | 864 | WP_001829495.1 | ribosome biogenesis GTPase YlqF | - |
| KB230_RS07340 (KB230_07340) | - | 1579004..1579153 (-) | 150 | WP_162154119.1 | hypothetical protein | - |
| KB230_RS07345 (KB230_07345) | - | 1579312..1581912 (+) | 2601 | WP_234966977.1 | YfhO family protein | - |
| KB230_RS07350 (KB230_07350) | - | 1581905..1584508 (+) | 2604 | WP_002489341.1 | YfhO family protein | - |
| KB230_RS07355 (KB230_07355) | rplS | 1585038..1585388 (-) | 351 | WP_002436293.1 | 50S ribosomal protein L19 | - |
| KB230_RS07360 (KB230_07360) | trmD | 1585494..1586231 (-) | 738 | WP_001829466.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| KB230_RS07365 (KB230_07365) | rimM | 1586231..1586734 (-) | 504 | WP_001832559.1 | ribosome maturation factor RimM | - |
| KB230_RS07370 (KB230_07370) | rpsP | 1586861..1587136 (-) | 276 | WP_002439483.1 | 30S ribosomal protein S16 | - |
| KB230_RS07375 (KB230_07375) | ffh | 1587444..1588811 (-) | 1368 | WP_001830113.1 | signal recognition particle protein | - |
| KB230_RS07380 (KB230_07380) | - | 1588842..1589174 (-) | 333 | WP_002457379.1 | putative DNA-binding protein | - |
| KB230_RS07385 (KB230_07385) | ftsY | 1589176..1590402 (-) | 1227 | WP_002476650.1 | signal recognition particle-docking protein FtsY | - |
| KB230_RS07390 (KB230_07390) | smc | 1590399..1593968 (-) | 3570 | WP_002502931.1 | chromosome segregation protein SMC | - |
| KB230_RS07395 (KB230_07395) | rnc | 1594095..1594832 (-) | 738 | WP_002456575.1 | ribonuclease III | - |
| KB230_RS07400 (KB230_07400) | - | 1594947..1595180 (-) | 234 | WP_001830184.1 | acyl carrier protein | - |
| KB230_RS07405 (KB230_07405) | fabG | 1595344..1596078 (-) | 735 | WP_001830161.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| KB230_RS07410 (KB230_07410) | fabD | 1596071..1596997 (-) | 927 | WP_002473278.1 | ACP S-malonyltransferase | - |
| KB230_RS07415 (KB230_07415) | plsX | 1596999..1597976 (-) | 978 | WP_001830112.1 | phosphate acyltransferase PlsX | - |
| KB230_RS07420 (KB230_07420) | fapR | 1597978..1598538 (-) | 561 | WP_001830099.1 | transcription factor FapR | - |
| KB230_RS07425 (KB230_07425) | recG | 1598697..1600745 (-) | 2049 | WP_002489349.1 | ATP-dependent DNA helicase RecG | - |
| KB230_RS07430 (KB230_07430) | fakA | 1600950..1602608 (-) | 1659 | WP_002489351.1 | fatty acid kinase catalytic subunit FakA | - |
| KB230_RS07435 (KB230_07435) | - | 1602623..1602997 (-) | 375 | WP_001830156.1 | Asp23/Gls24 family envelope stress response protein | - |
Sequence
Protein
Download Length: 349 a.a. Molecular weight: 37927.75 Da Isoelectric Point: 4.9995
>NTDB_id=646484 KB230_RS07130 WP_002439552.1 1529234..1530283(-) (recA) [Staphylococcus epidermidis strain 45A6]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKNYLKENPQIKEEIDR
KLREKLGIFDGDVDENENEDDSPKTLFDE
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRRVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVAEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKNYLKENPQIKEEIDR
KLREKLGIFDGDVDENENEDDSPKTLFDE
Nucleotide
Download Length: 1050 bp
>NTDB_id=646484 KB230_RS07130 WP_002439552.1 1529234..1530283(-) (recA) [Staphylococcus epidermidis strain 45A6]
TTGGATAATGAACGTCAAAAAGCTTTAGATACAGTCATTAAAAACATGGAAAAATCTTTTGGTAAAGGTGCCGTTATGAA
GTTAGGCGATAATAAAGGTCGCAGAGTATCAAGTACTTCAAGTGGTTCTGTTACAGTTGATAATGCATTAGGGGTTGGAG
GTTATCCTAAAGGAAGAATTATCGAAATATATGGACCTGAAAGTTCAGGTAAGACGACAGTAGCTTTACATGCTATCGCC
GAAGTACAAAAAAACGGTGGTGTAGCAGCATTTATCGATGCCGAACATGCTCTCGATCCAGTATATGCACAAGCATTAGG
TGTAGATATTGATAATTTATACTTATCTCAACCTGATCATGGTGAACAAGGTCTTGAAATCGCCGAAGCTTTTGTTCGTA
GTGGTGCTGTGGACATTGTTGTTGTCGATTCAGTAGCAGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACTCATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCATTAAGAAAGTTATCAGGTGCTATTTCTAAATCTAATACTAC
AGCTATATTTATTAACCAAATTCGTGAAAAGGTCGGCGTGATGTTCGGAAATCCTGAAACAACGCCTGGTGGTAGAGCCC
TGAAATTCTATAGTTCTGTACGTTTAGAGGTAAGAAGAGCAGAGCAGTTAAAACAAGGTCAAGACATTGTAGGTAACAGA
ACCAAAATAAAAGTTGTAAAAAATAAAGTTGCACCTCCATTTAGAGTTGCAGAAGTAGATATTATGTATGGTCAAGGTAT
CTCTAAGGAAGGAGAGCTCATTGATTTAGGTGTAGAGAATGATATCGTTGATAAATCAGGTGCTTGGTATTCTTATAATG
GAGATAGAATGGGCCAAGGTAAAGAAAACGTCAAAAATTATCTTAAGGAAAATCCACAAATCAAAGAAGAAATTGACCGT
AAGTTACGTGAAAAGTTAGGTATTTTCGATGGTGATGTGGATGAAAATGAAAATGAAGACGATTCACCAAAAACTTTATT
TGATGAATAG
TTGGATAATGAACGTCAAAAAGCTTTAGATACAGTCATTAAAAACATGGAAAAATCTTTTGGTAAAGGTGCCGTTATGAA
GTTAGGCGATAATAAAGGTCGCAGAGTATCAAGTACTTCAAGTGGTTCTGTTACAGTTGATAATGCATTAGGGGTTGGAG
GTTATCCTAAAGGAAGAATTATCGAAATATATGGACCTGAAAGTTCAGGTAAGACGACAGTAGCTTTACATGCTATCGCC
GAAGTACAAAAAAACGGTGGTGTAGCAGCATTTATCGATGCCGAACATGCTCTCGATCCAGTATATGCACAAGCATTAGG
TGTAGATATTGATAATTTATACTTATCTCAACCTGATCATGGTGAACAAGGTCTTGAAATCGCCGAAGCTTTTGTTCGTA
GTGGTGCTGTGGACATTGTTGTTGTCGATTCAGTAGCAGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACTCATGTTGGTTTACAAGCAAGATTAATGTCTCAAGCATTAAGAAAGTTATCAGGTGCTATTTCTAAATCTAATACTAC
AGCTATATTTATTAACCAAATTCGTGAAAAGGTCGGCGTGATGTTCGGAAATCCTGAAACAACGCCTGGTGGTAGAGCCC
TGAAATTCTATAGTTCTGTACGTTTAGAGGTAAGAAGAGCAGAGCAGTTAAAACAAGGTCAAGACATTGTAGGTAACAGA
ACCAAAATAAAAGTTGTAAAAAATAAAGTTGCACCTCCATTTAGAGTTGCAGAAGTAGATATTATGTATGGTCAAGGTAT
CTCTAAGGAAGGAGAGCTCATTGATTTAGGTGTAGAGAATGATATCGTTGATAAATCAGGTGCTTGGTATTCTTATAATG
GAGATAGAATGGGCCAAGGTAAAGAAAACGTCAAAAATTATCTTAAGGAAAATCCACAAATCAAAGAAGAAATTGACCGT
AAGTTACGTGAAAAGTTAGGTATTTTCGATGGTGATGTGGATGAAAATGAAAATGAAGACGATTCACCAAAAACTTTATT
TGATGAATAG
Similar proteins
Only experimentally validated proteins are listed.