Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   L0992_RS13470 Genome accession   NZ_CP090854
Coordinates   3088564..3089604 (-) Length   346 a.a.
NCBI ID   WP_176680438.1    Uniprot ID   -
Organism   Vibrio pomeroyi strain YSX02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3083564..3094604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0992_RS13455 (L0992_13455) csrA 3083959..3084156 (-) 198 WP_004415691.1 carbon storage regulator CsrA -
  L0992_RS13460 (L0992_13460) - 3084249..3085430 (-) 1182 WP_373951493.1 aspartate kinase -
  L0992_RS13465 (L0992_13465) alaS 3085649..3088231 (-) 2583 WP_373948827.1 alanine--tRNA ligase -
  L0992_RS13470 (L0992_13470) recA 3088564..3089604 (-) 1041 WP_176680438.1 recombinase RecA Machinery gene
  L0992_RS13475 (L0992_13475) pncC 3089744..3090238 (-) 495 WP_373948829.1 nicotinamide-nucleotide amidase -
  L0992_RS13480 (L0992_13480) mutS 3090363..3092924 (+) 2562 WP_373948831.1 DNA mismatch repair protein MutS -
  L0992_RS13485 (L0992_13485) rpoS 3093075..3094055 (-) 981 WP_017059027.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37342.82 Da        Isoelectric Point: 4.8285

>NTDB_id=645263 L0992_RS13470 WP_176680438.1 3088564..3089604(-) (recA) [Vibrio pomeroyi strain YSX02]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYKGDKIGQGKANAGKYLRENPEVALEIDT
KLRELLLTPAVLEEKDVEQEEENEEL

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=645263 L0992_RS13470 WP_176680438.1 3088564..3089604(-) (recA) [Vibrio pomeroyi strain YSX02]
ATGGACGAGAATAAACAAAAAGCGTTAGCCGCAGCCCTTGGTCAGATTGAAAAGCAATTTGGTAAAGGTTCTATCATGCG
TCTTGGTGATAACCGCACAATGGACGTAGAAACTATTTCTACTGGTTCTCTATCTCTAGATATCGCACTAGGTGCTGGTG
GCCTACCGATGGGACGTATCGTAGAAGTTTACGGTCCAGAATCATCAGGTAAAACAACGCTAACGCTTGAGCTTATTGCT
GCAGCACAAAAAGTTGGCAAGACGTGTGCTTTCGTTGATGCGGAACACGCACTAGACCCTATCTACGCTCAAAAGCTTGG
TGTTGATATCGATGCGCTTCTTGTTTCTCAACCAGATACGGGTGAGCAAGCGCTAGAAATCTGTGATGCACTGGCTCGTT
CAGGTGCAATCGATGTACTTGTTATTGACTCAGTAGCAGCACTAACACCAAAAGCAGAAATCGAAGGCGAAATGGGCGAT
AGCCACATGGGTCTTCAGGCTCGTATGCTTTCTCAAGCGATGCGTAAGCTAACTGGTAACCTAAAGCAGTCTAACTGTAT
GGCTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACAACAACAGGTGGTAATGCTC
TTAAGTTCTACGCATCTGTTCGTCTTGATATCCGCCGTACTGGTGCGATCAAAGATGGTGATGAGGTTGTTGGTAACGAA
ACACGTATCAAGGTTGTTAAGAACAAGATTGCTGCACCGTTTAAACAAGCTGAAACTCAGATCCTATACGGTAAAGGCTT
CAACCGTGAAGGTGAGCTTATCGATTTAGGTGTTAAGAACAAGCTGGTAGAAAAAGCGGGCGCTTGGTACAGCTACAAGG
GCGATAAGATCGGCCAAGGTAAAGCTAACGCTGGTAAATACCTACGTGAAAACCCAGAAGTTGCTCTTGAGATCGACACT
AAACTTCGCGAGTTGCTACTAACTCCTGCTGTTCTTGAAGAAAAAGACGTAGAACAGGAAGAAGAAAACGAAGAGCTATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

89.97

95.087

0.855
  recA Vibrio cholerae O1 biovar El Tor strain E7946

89.97

95.087

0.855
  recA Pseudomonas stutzeri DSM 10701

76.133

95.665

0.728
  recA Acinetobacter baumannii D1279779

72.807

98.844

0.72
  recA Acinetobacter baylyi ADP1

71.676

100

0.717
  recA Glaesserella parasuis strain SC1401

67.045

100

0.682
  recA Neisseria gonorrhoeae MS11

67.241

100

0.676
  recA Neisseria gonorrhoeae MS11

67.241

100

0.676
  recA Neisseria gonorrhoeae strain FA1090

67.241

100

0.676
  recA Ralstonia pseudosolanacearum GMI1000

69.817

94.798

0.662
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

92.197

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.775

0.584
  recA Streptococcus pneumoniae D39

61.92

93.353

0.578
  recA Streptococcus mitis SK321

61.92

93.353

0.578
  recA Streptococcus pneumoniae TIGR4

61.92

93.353

0.578
  recA Streptococcus pneumoniae Rx1

61.92

93.353

0.578
  recA Streptococcus pneumoniae R6

61.92

93.353

0.578
  recA Streptococcus mutans UA159

57.637

100

0.578
  recA Helicobacter pylori strain NCTC11637

61.538

93.931

0.578
  recA Helicobacter pylori 26695

61.231

93.931

0.575
  recA Streptococcus mitis NCTC 12261

61.61

93.353

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

58.529

98.266

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.819

95.665

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

92.775

0.569
  recA Streptococcus pyogenes NZ131

60.308

93.931

0.566
  recA Lactococcus lactis subsp. cremoris KW2

59.443

93.353

0.555