Detailed information NTG0645265

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: L0992_RS13485
• Genome accession: NZ_CP090854
• Coordinates: 3093075..3094055 (-)
• Length: 326 a.a.
• NCBI ID: WP_017059027.1
• Uniprot ID: A0A1E5FN76
• Organism: Vibrio pomeroyi strain YSX02
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3088075..3099055

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L0992_RS13470 (L0992_13470)	recA	3088564..3089604 (-)	1041	WP_176680438.1	recombinase RecA	Machinery gene
L0992_RS13475 (L0992_13475)	pncC	3089744..3090238 (-)	495	WP_373948829.1	nicotinamide-nucleotide amidase	-
L0992_RS13480 (L0992_13480)	mutS	3090363..3092924 (+)	2562	WP_373948831.1	DNA mismatch repair protein MutS	-
L0992_RS13485 (L0992_13485)	rpoS	3093075..3094055 (-)	981	WP_017059027.1	RNA polymerase sigma factor RpoS	Regulator
L0992_RS13490 (L0992_13490)	nlpD	3094153..3095067 (-)	915	WP_123284049.1	murein hydrolase activator NlpD	-
L0992_RS13495 (L0992_13495)	-	3095103..3095729 (-)	627	WP_017633213.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
L0992_RS13500 (L0992_13500)	surE	3095730..3096473 (-)	744	WP_373948836.1	5'/3'-nucleotidase SurE	-
L0992_RS13505 (L0992_13505)	truD	3096549..3097595 (-)	1047	WP_373948838.1	tRNA pseudouridine(13) synthase TruD	-
L0992_RS13510 (L0992_13510)	ispF	3097618..3098097 (-)	480	WP_373951495.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
L0992_RS13515 (L0992_13515)	ispD	3098100..3098801 (-)	702	WP_373948840.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37218.43 Da
• Isoelectric Point: 5.1506

>NTDB_id=645265 L0992_RS13485 WP_017059027.1 3093075..3094055(-) (rpoS) [Vibrio pomeroyi strain YSX02]
MSISNAVTKEEFDLDQATTEPEALGKAKRTVTKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=645265 L0992_RS13485 WP_017059027.1 3093075..3094055(-) (rpoS) [Vibrio pomeroyi strain YSX02]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTGACCAAGCAACCACGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGTTGAAGTTACGTCTAAAAGCTTAGATGCCACTCAACTGT
ATCTAGGCGAAATCGGTTTCTCACCACTACTAACCGCAGAAGAAGAAGTGCTTTACGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGTAAACGCATGATCGAAAGTAACCTGCGTTTGGTGGTAAAAATTTCTCGTCGTTATAGCAACCGTGGCTT
GGCACTTCTCGATCTAATCGAAGAAGGCAACCTAGGCTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAGCGTGGCTTCC
GCTTCTCAACTTACGCAACATGGTGGATTCGTCAAACCATTGAACGTGCGTTGATGAATCAGACTCGCACTATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACGGCAAGAGAACTATCACAAAAGCTTGACCACGAACCAAC
AGCTGAAGAGATCGCTTCTAAGCTAGATAAGCCAGTTGGTGATGTGAGCAAGATGCTTCGTCTAAACGAACGAGTGAGCT
CTGTTGATACGCCAATTGGTGGTGATGGTGAGAAAGCACTGTTGGATATTATTCCAGACATCAACAATTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCACTGATCTTCTGGCTTGATGAACTGAATCCGAAGCAGAAAGAGGTGCT
TGCACGTCGATTTGGACTACTAGGCTATGAACCGTCAACGCTAGAAGAAGTTGGCCGTGAAATCAGCCTGACTCGTGAGC
GAGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGTGAGATTCTGATCAAACAGGGTCTGAACATGGAAAACTTG
TTCAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

3D structure

• AlphaFold DB: A0A1E5FN76

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.737	100	0.837