Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LZI70_RS09450 Genome accession   NZ_CP090614
Coordinates   2089697..2090734 (+) Length   345 a.a.
NCBI ID   WP_255229916.1    Uniprot ID   -
Organism   Vibrio pelagius strain WXL662     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2084697..2095734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZI70_RS09435 (LZI70_09420) rpoS 2085306..2086286 (+) 981 WP_255229913.1 RNA polymerase sigma factor RpoS Regulator
  LZI70_RS09440 (LZI70_09425) mutS 2086371..2088932 (-) 2562 WP_255229914.1 DNA mismatch repair protein MutS -
  LZI70_RS09445 (LZI70_09430) pncC 2089065..2089556 (+) 492 WP_255229915.1 nicotinamide-nucleotide amidase -
  LZI70_RS09450 (LZI70_09435) recA 2089697..2090734 (+) 1038 WP_255229916.1 recombinase RecA Machinery gene
  LZI70_RS09455 (LZI70_09440) - 2090813..2091178 (-) 366 WP_255229917.1 DUF805 domain-containing protein -
  LZI70_RS09460 (LZI70_09445) alaS 2091394..2093976 (+) 2583 WP_255229918.1 alanine--tRNA ligase -
  LZI70_RS09465 (LZI70_09450) - 2094196..2095377 (+) 1182 WP_255231796.1 aspartate kinase -
  LZI70_RS09470 (LZI70_09455) csrA 2095470..2095667 (+) 198 WP_004415691.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37189.61 Da        Isoelectric Point: 4.9632

>NTDB_id=644004 LZI70_RS09450 WP_255229916.1 2089697..2090734(+) (recA) [Vibrio pelagius strain WXL662]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIA
AAQREGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEIVGNE
TRIKVVKNKIAAPFKQAETQILYGQGFNREGELIDLGVKHKLIEKAGAWYSYNGDKIGQGKANAGKFLRENPEAAKTIDA
KLREMLLTPAQPEAPETGEMPEEEF

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=644004 LZI70_RS09450 WP_255229916.1 2089697..2090734(+) (recA) [Vibrio pelagius strain WXL662]
ATGGACGAGAATAAACAAAAAGCGTTAGCCGCAGCCCTTGGTCAGATTGAAAAGCAGTTTGGTAAAGGCTCTATCATGCG
TCTTGGTGACAACCGCACAATGGATGTAGAAACGATTTCTACTGGCTCGCTATCTCTAGATATCGCATTGGGTGCTGGTG
GTCTACCAATGGGTCGTATCGTTGAGATCTACGGTCCAGAATCATCAGGTAAAACAACACTAACACTAGAGCTTATTGCA
GCAGCTCAGCGTGAAGGTAAAACGTGTGCATTCGTCGACGCGGAGCACGCACTAGACCCTATCTACGCTCAAAAACTGGG
TGTTGATATCGATGCACTTCTTGTTTCTCAACCAGATACTGGTGAGCAAGCACTAGAAATCTGTGATGCGCTAGCGCGTT
CAGGTGCGATTGACGTTCTTGTTGTCGACTCAGTAGCAGCATTGACACCGAAAGCGGAAATCGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTTCAAGCACGTATGCTATCTCAAGCAATGCGTAAGCTAACAGGTAACCTTAAGCAATCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATCGGTGTGATGTTTGGTAACCCAGAGACGACGACGGGTGGTAACGCAC
TTAAGTTCTACGCATCTGTTCGTCTTGATATTCGTCGTACTGGCTCTATCAAAGAGGGCGACGAGATTGTGGGTAACGAA
ACGCGTATCAAGGTTGTTAAGAACAAGATTGCTGCGCCATTTAAGCAAGCAGAAACTCAAATTCTATACGGCCAAGGCTT
CAACCGTGAAGGTGAGCTCATCGACCTAGGTGTTAAGCACAAGCTGATTGAAAAAGCAGGTGCTTGGTACAGCTACAACG
GCGATAAGATTGGTCAAGGTAAAGCGAACGCTGGTAAGTTCCTTCGTGAGAACCCAGAAGCAGCGAAAACTATCGATGCT
AAACTTCGTGAAATGCTACTGACTCCAGCTCAGCCTGAAGCACCAGAAACTGGTGAGATGCCAGAAGAAGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

87.535

100

0.896
  recA Vibrio cholerae strain A1552

87.535

100

0.896
  recA Pseudomonas stutzeri DSM 10701

73.529

98.551

0.725
  recA Acinetobacter baylyi ADP1

72.303

99.42

0.719
  recA Acinetobacter baumannii D1279779

74.39

95.072

0.707
  recA Neisseria gonorrhoeae MS11

67.908

100

0.687
  recA Neisseria gonorrhoeae MS11

67.908

100

0.687
  recA Neisseria gonorrhoeae strain FA1090

67.908

100

0.687
  recA Glaesserella parasuis strain SC1401

70.679

93.913

0.664
  recA Ralstonia pseudosolanacearum GMI1000

71.111

91.304

0.649
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.323

92.464

0.586
  recA Streptococcus mutans UA159

61.231

94.203

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

93.043

0.577
  recA Streptococcus pneumoniae D39

61.61

93.623

0.577
  recA Streptococcus pneumoniae TIGR4

61.61

93.623

0.577
  recA Streptococcus pneumoniae R6

61.61

93.623

0.577
  recA Streptococcus pneumoniae Rx1

61.61

93.623

0.577
  recA Helicobacter pylori 26695

60.856

94.783

0.577
  recA Streptococcus mitis NCTC 12261

61.3

93.623

0.574
  recA Streptococcus mitis SK321

61.3

93.623

0.574
  recA Helicobacter pylori strain NCTC11637

60.55

94.783

0.574
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.517

95.942

0.571
  recA Streptococcus pyogenes NZ131

60.615

94.203

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.514

91.884

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

60.125

93.043

0.559
  recA Lactococcus lactis subsp. cremoris KW2

59.133

93.623

0.554