Detailed information NTG0644002

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LZI70_RS09435
• Genome accession: NZ_CP090614
• Coordinates: 2085306..2086286 (+)
• Length: 326 a.a.
• NCBI ID: WP_255229913.1
• Uniprot ID: -
• Organism: Vibrio pelagius strain WXL662
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2080306..2091286

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LZI70_RS09405 (LZI70_09390)	ispD	2080564..2081265 (+)	702	WP_255229908.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
LZI70_RS09410 (LZI70_09395)	ispF	2081268..2081747 (+)	480	WP_255231795.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
LZI70_RS09415 (LZI70_09400)	truD	2081770..2082819 (+)	1050	WP_255229909.1	tRNA pseudouridine(13) synthase TruD	-
LZI70_RS09420 (LZI70_09405)	surE	2082858..2083604 (+)	747	WP_255229910.1	5'/3'-nucleotidase SurE	-
LZI70_RS09425 (LZI70_09410)	-	2083601..2084227 (+)	627	WP_255229911.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
LZI70_RS09430 (LZI70_09415)	-	2084260..2085210 (+)	951	WP_255229912.1	peptidoglycan DD-metalloendopeptidase family protein	-
LZI70_RS09435 (LZI70_09420)	rpoS	2085306..2086286 (+)	981	WP_255229913.1	RNA polymerase sigma factor RpoS	Regulator
LZI70_RS09440 (LZI70_09425)	mutS	2086371..2088932 (-)	2562	WP_255229914.1	DNA mismatch repair protein MutS	-
LZI70_RS09445 (LZI70_09430)	pncC	2089065..2089556 (+)	492	WP_255229915.1	nicotinamide-nucleotide amidase	-
LZI70_RS09450 (LZI70_09435)	recA	2089697..2090734 (+)	1038	WP_255229916.1	recombinase RecA	Machinery gene
LZI70_RS09455 (LZI70_09440)	-	2090813..2091178 (-)	366	WP_255229917.1	DUF805 domain-containing protein	-

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37291.34 Da
• Isoelectric Point: 4.7340

>NTDB_id=644002 LZI70_RS09435 WP_255229913.1 2085306..2086286(+) (rpoS) [Vibrio pelagius strain WXL662]
MSISNAVIKEEFELDQETTELANVDQGEQTVTKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIATKLDKPVSDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDVNNSDPE
VSTQDSDIKTSLIDWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=644002 LZI70_RS09435 WP_255229913.1 2085306..2086286(+) (rpoS) [Vibrio pelagius strain WXL662]
ATGAGTATCAGCAATGCAGTTATTAAAGAAGAGTTCGAACTTGACCAAGAGACCACGGAGTTGGCAAACGTTGATCAAGG
CGAGCAAACCGTCACTAAAAAAACAGAAGCGAAAGAAGAAGTCGAAGTGACTTCGAAAAGCCTAGATGCAACTCAGTTGT
ATTTGGGTGAAATTGGCTTCTCTCCACTCTTAACCGCAGAAGAAGAAGTACTTTATGCTCGTCGCGCACTACGTGGAGAC
GAAGCAGCCCGCAAGCGCATGATCGAAAGTAACCTACGTCTTGTGGTTAAAATCTCACGTCGTTACAGCAACCGTGGTTT
AGCTCTGCTCGATCTTATCGAAGAGGGTAACCTAGGTTTGATCCGCGCTGTTGAGAAGTTCGATCCAGAACGAGGTTTCC
GCTTTTCTACTTACGCGACATGGTGGATCCGTCAAACGATCGAACGCGCGTTGATGAACCAAACGCGTACTATTCGTCTG
CCAATACATGTTGTGAAAGAGCTAAACATCTACCTGCGTACTGCTCGCGAGTTATCACAAAAGCTGGATCATGAGCCAAC
CGCAGAAGAGATTGCGACTAAGCTAGATAAGCCGGTAAGCGACGTAAGCAAAATGCTACGTCTTAACGAGCGCGTGAGCT
CAGTAGACACGCCTATCGGTGGTGACGGTGAGAAAGCACTACTCGACATCATTCCTGATGTAAACAATTCCGACCCTGAG
GTTTCAACCCAAGACAGCGATATAAAAACATCACTGATCGACTGGTTAGATGAACTGAATCCTAAGCAGAAAGAAGTGCT
TGCACGTCGTTTTGGTCTTCTTGGTTATGAGCCATCGACTCTTGAAGAAGTTGGTCGTGAGATCAGCCTAACTCGTGAGC
GTGTACGCCAGATTCAAGTAGAAGGTCTACGTCGTTTAAGAGAAATCCTTATCAAGCAAGGCTTGAATATGGAGAACCTA
TTCAACGTTGAAAACGATTAG

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

• Sigma-70 region 3 (Sigma70_r3) (167-240)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.437	100	0.834