Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LZP85_RS13255 Genome accession   NZ_CP090431
Coordinates   2574139..2575176 (-) Length   345 a.a.
NCBI ID   WP_025908597.1    Uniprot ID   A0A1N6NUD0
Organism   Priestia flexa strain DMP08     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2569139..2580176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZP85_RS13235 (LZP85_13235) - 2569953..2570867 (-) 915 WP_061785728.1 dipeptidase -
  LZP85_RS13240 (LZP85_13240) spoVS 2570946..2571206 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  LZP85_RS13245 (LZP85_13245) - 2571441..2572238 (-) 798 WP_234561749.1 TIGR00282 family metallophosphoesterase -
  LZP85_RS13250 (LZP85_13250) rny 2572298..2573857 (-) 1560 WP_025908598.1 ribonuclease Y -
  LZP85_RS13255 (LZP85_13255) recA 2574139..2575176 (-) 1038 WP_025908597.1 recombinase RecA Machinery gene
  LZP85_RS13260 (LZP85_13260) cinA 2575429..2576667 (-) 1239 WP_061785730.1 competence/damage-inducible protein A Machinery gene
  LZP85_RS13265 (LZP85_13265) pgsA 2576681..2577265 (-) 585 WP_025908595.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LZP85_RS13270 (LZP85_13270) - 2577353..2578300 (-) 948 WP_234561751.1 helix-turn-helix domain-containing protein -
  LZP85_RS13275 (LZP85_13275) - 2578313..2579104 (-) 792 WP_035320247.1 DUF3388 domain-containing protein -
  LZP85_RS13280 (LZP85_13280) - 2579499..2579759 (-) 261 WP_119542597.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37498.53 Da        Isoelectric Point: 4.7775

>NTDB_id=642369 LZP85_RS13255 WP_025908597.1 2574139..2575176(-) (recA) [Priestia flexa strain DMP08]
MNDRQAALDMALKQIEKQFGKGSIMKLGEQTERKISTVSSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVDIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAVFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIVGNKT
RIKVVKNKVAPPFRAAEVDIMYGEGISKEGEILDIASDLDIVQKSGAWYSYNEERLGQGRENAKQFLKENVDIRQEIAGQ
VREYHGLDEAAEQMPEDDAQDELKI

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=642369 LZP85_RS13255 WP_025908597.1 2574139..2575176(-) (recA) [Priestia flexa strain DMP08]
GTGAACGATCGTCAAGCAGCCCTTGATATGGCTCTAAAACAAATTGAAAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAACAAACGGAACGTAAAATTTCAACTGTGTCTAGTGGTTCTCTAGCGTTAGATGTTGCGCTTGGTGTAGGTGGGT
ATCCACGCGGACGTATTATTGAAGTTTATGGTCCAGAAAGCTCTGGTAAAACAACAGTTGCGCTTCATGCAATTGCAGAA
GTACAGCAGCAGGGTGGACAAGCAGCGTTTATCGATGCTGAGCATGCGTTAGACCCGGTGTATGCACAAAAGTTAGGTGT
CGATATTGACGAGCTTCTTTTATCACAGCCTGATACAGGTGAACAAGCACTTGAAATTGCTGAAGCGTTAGTTCGTAGTG
GAGCAGTTGACATTCTGGTTATTGACTCTGTTGCAGCCCTTGTGCCTAAGGCTGAAATTGAAGGTGAAATGGGAGATTCT
CACGTTGGTTTACAAGCTCGTTTAATGTCTCAAGCACTTCGTAAGCTATCAGGTGCTATTAATAAGTCGAAAACAATTGC
TGTTTTCATTAACCAAATTCGTGAAAAAGTTGGCGTTATGTTTGGTAACCCTGAAACAACGCCAGGTGGACGTGCGCTTA
AGTTCTATTCTTCAGTGCGCCTTGAAGTTCGTCGTGCTGAGCAGTTGAAGCAAGGTAACGATATTGTAGGAAACAAGACA
AGAATTAAAGTTGTCAAAAACAAAGTAGCACCACCATTCCGCGCAGCTGAAGTGGATATTATGTACGGAGAAGGAATCTC
AAAAGAAGGAGAAATTTTAGATATTGCTTCTGATTTAGATATCGTACAAAAAAGTGGAGCTTGGTATTCTTATAACGAAG
AACGTTTAGGTCAAGGCCGTGAGAATGCGAAGCAGTTCCTAAAAGAAAATGTTGATATTCGTCAAGAAATTGCTGGCCAA
GTTCGTGAATATCATGGATTAGACGAAGCGGCAGAGCAAATGCCTGAAGACGATGCTCAAGATGAATTGAAAATTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1N6NUD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.634

95.072

0.852
  recA Latilactobacillus sakei subsp. sakei 23K

73.887

97.681

0.722
  recA Streptococcus pneumoniae D39

69.054

100

0.699
  recA Streptococcus pneumoniae Rx1

69.054

100

0.699
  recA Streptococcus pneumoniae R6

69.054

100

0.699
  recA Streptococcus pneumoniae TIGR4

69.054

100

0.699
  recA Streptococcus mitis NCTC 12261

69.275

100

0.693
  recA Streptococcus mitis SK321

69.275

100

0.693
  recA Streptococcus mutans UA159

69.277

96.232

0.667
  recA Streptococcus pyogenes NZ131

69.301

95.362

0.661
  recA Lactococcus lactis subsp. cremoris KW2

67.665

96.812

0.655
  recA Neisseria gonorrhoeae strain FA1090

63.45

99.13

0.629
  recA Neisseria gonorrhoeae MS11

63.45

99.13

0.629
  recA Neisseria gonorrhoeae MS11

63.45

99.13

0.629
  recA Ralstonia pseudosolanacearum GMI1000

64.939

95.072

0.617
  recA Acinetobacter baylyi ADP1

60.997

98.841

0.603
  recA Helicobacter pylori 26695

61.607

97.391

0.6
  recA Helicobacter pylori strain NCTC11637

61.607

97.391

0.6
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.526

99.13

0.6
  recA Vibrio cholerae strain A1552

63.863

93.043

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

93.043

0.594
  recA Acinetobacter baumannii D1279779

63.551

93.043

0.591
  recA Glaesserella parasuis strain SC1401

63.636

92.464

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.28

95.072

0.583
  recA Pseudomonas stutzeri DSM 10701

62.5

92.754

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

92.754

0.568