Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LZP85_RS13260 Genome accession   NZ_CP090431
Coordinates   2575429..2576667 (-) Length   412 a.a.
NCBI ID   WP_061785730.1    Uniprot ID   A0A0V8JSE8
Organism   Priestia flexa strain DMP08     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2570429..2581667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZP85_RS13240 (LZP85_13240) spoVS 2570946..2571206 (-) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  LZP85_RS13245 (LZP85_13245) - 2571441..2572238 (-) 798 WP_234561749.1 TIGR00282 family metallophosphoesterase -
  LZP85_RS13250 (LZP85_13250) rny 2572298..2573857 (-) 1560 WP_025908598.1 ribonuclease Y -
  LZP85_RS13255 (LZP85_13255) recA 2574139..2575176 (-) 1038 WP_025908597.1 recombinase RecA Machinery gene
  LZP85_RS13260 (LZP85_13260) cinA 2575429..2576667 (-) 1239 WP_061785730.1 competence/damage-inducible protein A Machinery gene
  LZP85_RS13265 (LZP85_13265) pgsA 2576681..2577265 (-) 585 WP_025908595.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LZP85_RS13270 (LZP85_13270) - 2577353..2578300 (-) 948 WP_234561751.1 helix-turn-helix domain-containing protein -
  LZP85_RS13275 (LZP85_13275) - 2578313..2579104 (-) 792 WP_035320247.1 DUF3388 domain-containing protein -
  LZP85_RS13280 (LZP85_13280) - 2579499..2579759 (-) 261 WP_119542597.1 DUF3243 domain-containing protein -
  LZP85_RS13285 (LZP85_13285) ymfI 2579826..2580551 (-) 726 WP_078989381.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45010.32 Da        Isoelectric Point: 4.9423

>NTDB_id=642370 LZP85_RS13260 WP_061785730.1 2575429..2576667(-) (cinA) [Priestia flexa strain DMP08]
MNAEIIGVGSELLLGQIANTNAQYLSKKFAELGINVYYHTVVGDNESRLKEAILTAKKRADLIVFTGGLGPTKDDLTKET
IASELGVSLVTDQQALESIEAYFEKTNRTMTPNNRKQAIVLEGATILPNDYGMAPGMGITVRGIHYMLFPGPPKELYPMY
ESYGQAYLAEKLDMKEQIESRVLRFFGIGESQLETDIEDLLDAQTNPTIAPLAADGEVTLRLTAKHGDVVEAHRMLDEVE
KQIMSRVGEFFYGYDMTSLQAELIATMREQEVTVASAESLTGGLFSGTLTSIPGAGDVVKGSIVAYHTEVKHNVLHVAKE
TLEQDGAVSERCAEEMAVGVKKLTGSDVGISFTGVAGPSKQEGKEVGTVYIGIAFKNEKTRVYSLKLTGSRDGIRKRTVN
YGIYYLLQLLKQ

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=642370 LZP85_RS13260 WP_061785730.1 2575429..2576667(-) (cinA) [Priestia flexa strain DMP08]
ATGAACGCGGAAATTATTGGAGTAGGTTCAGAGCTTTTGCTAGGCCAAATTGCCAATACAAACGCGCAATACCTATCTAA
AAAGTTTGCAGAGCTTGGTATTAACGTATATTATCATACGGTAGTTGGCGATAATGAAAGCCGATTGAAAGAAGCAATTT
TGACCGCCAAAAAACGTGCGGATTTGATTGTGTTTACAGGTGGGCTTGGGCCAACCAAAGATGACCTTACAAAAGAAACA
ATTGCTTCAGAACTAGGTGTCTCACTTGTAACAGATCAGCAAGCGCTTGAAAGTATCGAAGCGTATTTCGAAAAAACGAA
TCGGACAATGACGCCTAATAATAGGAAGCAAGCAATTGTACTTGAAGGTGCAACAATACTGCCAAACGATTATGGAATGG
CACCAGGAATGGGCATTACGGTGCGTGGTATTCACTACATGTTATTTCCTGGTCCACCAAAGGAACTTTACCCTATGTAT
GAATCGTATGGACAAGCATATTTAGCAGAAAAGCTAGATATGAAAGAGCAAATTGAATCTCGCGTTTTACGTTTCTTTGG
AATTGGAGAGTCTCAGTTAGAAACAGATATTGAGGATTTATTAGATGCACAAACAAACCCAACCATTGCGCCGTTAGCTG
CTGATGGAGAAGTAACGCTTCGCTTAACGGCTAAGCATGGAGATGTGGTTGAGGCTCATCGAATGCTTGATGAAGTAGAA
AAGCAGATTATGAGCCGTGTAGGAGAGTTTTTCTACGGATACGATATGACATCTCTACAGGCTGAACTCATTGCTACAAT
GCGAGAGCAAGAAGTGACCGTTGCTTCAGCTGAAAGTTTAACTGGCGGATTGTTTAGTGGGACGCTAACGAGCATTCCTG
GAGCTGGAGATGTTGTAAAAGGTAGCATTGTTGCTTATCACACTGAGGTAAAGCACAATGTGCTACATGTAGCAAAAGAA
ACCCTAGAGCAAGACGGGGCAGTTAGCGAGAGATGCGCAGAAGAAATGGCTGTTGGTGTGAAAAAGCTGACAGGCTCTGA
TGTTGGTATTAGCTTTACAGGCGTCGCTGGTCCGTCTAAGCAAGAAGGTAAAGAAGTTGGTACAGTTTACATTGGTATAG
CTTTTAAAAATGAAAAAACACGCGTGTATTCGCTAAAGCTTACAGGCAGTCGTGATGGTATCCGTAAACGCACTGTGAAT
TATGGAATTTATTATCTTTTACAACTATTGAAACAGTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0V8JSE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

61.22

99.515

0.609
  cinA Streptococcus mitis SK321

46.247

100

0.464
  cinA Streptococcus pneumoniae TIGR4

46.247

100

0.464
  cinA Streptococcus mitis NCTC 12261

46.005

100

0.461
  cinA Streptococcus pneumoniae Rx1

45.763

100

0.459
  cinA Streptococcus pneumoniae R6

45.763

100

0.459
  cinA Streptococcus pneumoniae D39

45.521

100

0.456
  cinA Streptococcus mutans UA159

44.686

100

0.449