Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LWM38_RS02550 Genome accession   NZ_CP090019
Coordinates   520575..521615 (+) Length   346 a.a.
NCBI ID   WP_017056586.1    Uniprot ID   A0A4V5R5U9
Organism   Vibrio kanaloae strain KH-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 515575..526615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWM38_RS02535 (LWM38_02535) rpoS 516160..517140 (+) 981 WP_233894667.1 RNA polymerase sigma factor RpoS Regulator
  LWM38_RS02540 (LWM38_02540) mutS 517256..519817 (-) 2562 WP_017056584.1 DNA mismatch repair protein MutS -
  LWM38_RS02545 (LWM38_02545) pncC 519941..520435 (+) 495 WP_233894669.1 nicotinamide-nucleotide amidase -
  LWM38_RS02550 (LWM38_02550) recA 520575..521615 (+) 1041 WP_017056586.1 recombinase RecA Machinery gene
  LWM38_RS02555 (LWM38_02555) alaS 521934..524516 (+) 2583 WP_102507471.1 alanine--tRNA ligase -
  LWM38_RS02560 (LWM38_02560) - 524732..525913 (+) 1182 WP_146448683.1 aspartate kinase -
  LWM38_RS02565 (LWM38_02565) csrA 526006..526203 (+) 198 WP_009847619.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37342.86 Da        Isoelectric Point: 4.9043

>NTDB_id=640244 LWM38_RS02550 WP_017056586.1 520575..521615(+) (recA) [Vibrio kanaloae strain KH-4]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQKVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYKGDKIGQGKANAGKYLRENPEVALEIDT
KLRELLLTPAVLEEKDVEKEEENEEL

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=640244 LWM38_RS02550 WP_017056586.1 520575..521615(+) (recA) [Vibrio kanaloae strain KH-4]
ATGGACGAGAATAAACAAAAAGCGTTAGCCGCAGCCCTTGGTCAGATTGAAAAGCAATTTGGTAAAGGTTCGATCATGCG
TCTTGGTGATAACCGCACAATGGACGTAGAAACTATTTCTACAGGTTCTCTATCTCTAGATATCGCACTAGGTGCTGGTG
GCCTACCGATGGGACGTATCGTAGAAGTTTACGGTCCAGAATCATCAGGTAAAACAACGCTAACGCTTGAGCTTATTGCT
GCAGCACAGAAAGTAGGCAAAACGTGTGCATTCGTTGATGCGGAGCACGCACTAGACCCTATCTACGCTCAAAAGCTTGG
TGTTGATATCGATGCACTTCTTGTTTCTCAACCAGATACGGGTGAGCAAGCGCTTGAAATCTGTGATGCACTGGCTCGTT
CAGGTGCAATCGACGTTCTTGTTATTGACTCAGTAGCTGCACTAACACCAAAAGCAGAAATTGAAGGCGAAATGGGTGAC
AGCCACATGGGTCTTCAGGCTCGTATGCTTTCTCAAGCAATGCGTAAGCTGACGGGCAACCTTAAGCAGTCTAACTGTAT
GGCTATCTTCATTAACCAAATTCGTATGAAAATTGGTGTGATGTTCGGTAACCCAGAAACAACAACAGGTGGTAACGCAC
TTAAGTTTTACGCATCTGTTCGTCTTGATATTCGCCGTACTGGTGCGATTAAAGATGGTGATGAAGTTGTTGGTAACGAA
ACTCGTATCAAGGTCGTTAAGAACAAGATTGCTGCACCATTCAAACAAGCTGAGACTCAAATCCTTTACGGTAAAGGCTT
CAACCGCGAAGGTGAGCTTATCGATTTAGGTGTTAAGAATAAGCTAGTAGAAAAAGCGGGCGCTTGGTACAGCTACAAAG
GCGATAAGATCGGCCAAGGTAAAGCTAACGCTGGTAAATACCTACGTGAAAACCCAGAAGTTGCTCTAGAGATCGATACT
AAACTTCGTGAGTTACTACTGACTCCTGCTGTTCTTGAAGAGAAAGACGTAGAGAAAGAAGAAGAAAACGAAGAGCTATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V5R5U9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

89.97

95.087

0.855
  recA Vibrio cholerae O1 biovar El Tor strain E7946

89.97

95.087

0.855
  recA Pseudomonas stutzeri DSM 10701

76.133

95.665

0.728
  recA Acinetobacter baumannii D1279779

72.807

98.844

0.72
  recA Acinetobacter baylyi ADP1

71.676

100

0.717
  recA Glaesserella parasuis strain SC1401

67.045

100

0.682
  recA Neisseria gonorrhoeae MS11

67.241

100

0.676
  recA Neisseria gonorrhoeae MS11

67.241

100

0.676
  recA Neisseria gonorrhoeae strain FA1090

67.241

100

0.676
  recA Ralstonia pseudosolanacearum GMI1000

69.817

94.798

0.662
  recA Streptococcus mutans UA159

58.453

100

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

92.197

0.587
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

92.775

0.584
  recA Streptococcus pneumoniae D39

61.92

93.353

0.578
  recA Streptococcus pneumoniae TIGR4

61.92

93.353

0.578
  recA Streptococcus pneumoniae Rx1

61.92

93.353

0.578
  recA Streptococcus pneumoniae R6

61.92

93.353

0.578
  recA Streptococcus mitis SK321

61.92

93.353

0.578
  recA Helicobacter pylori strain NCTC11637

61.538

93.931

0.578
  recA Helicobacter pylori 26695

61.231

93.931

0.575
  recA Streptococcus mitis NCTC 12261

61.61

93.353

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

58.529

98.266

0.575
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.819

95.665

0.572
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

92.775

0.569
  recA Streptococcus pyogenes NZ131

60.308

93.931

0.566
  recA Lactococcus lactis subsp. cremoris KW2

59.443

93.353

0.555