Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   LWM38_RS02535 Genome accession   NZ_CP090019
Coordinates   516160..517140 (+) Length   326 a.a.
NCBI ID   WP_233894667.1    Uniprot ID   -
Organism   Vibrio kanaloae strain KH-4     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 511160..522140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWM38_RS02505 (LWM38_02505) ispD 511413..512114 (+) 702 WP_046223293.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  LWM38_RS02510 (LWM38_02510) ispF 512117..512596 (+) 480 WP_017056578.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  LWM38_RS02515 (LWM38_02515) truD 512619..513665 (+) 1047 WP_046223294.1 tRNA pseudouridine(13) synthase TruD -
  LWM38_RS02520 (LWM38_02520) surE 513741..514484 (+) 744 WP_136979137.1 5'/3'-nucleotidase SurE -
  LWM38_RS02525 (LWM38_02525) - 514485..515111 (+) 627 WP_017056581.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  LWM38_RS02530 (LWM38_02530) nlpD 515147..516061 (+) 915 WP_233894660.1 murein hydrolase activator NlpD -
  LWM38_RS02535 (LWM38_02535) rpoS 516160..517140 (+) 981 WP_233894667.1 RNA polymerase sigma factor RpoS Regulator
  LWM38_RS02540 (LWM38_02540) mutS 517256..519817 (-) 2562 WP_017056584.1 DNA mismatch repair protein MutS -
  LWM38_RS02545 (LWM38_02545) pncC 519941..520435 (+) 495 WP_233894669.1 nicotinamide-nucleotide amidase -
  LWM38_RS02550 (LWM38_02550) recA 520575..521615 (+) 1041 WP_017056586.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 37288.60 Da        Isoelectric Point: 5.2708

>NTDB_id=640242 LWM38_RS02535 WP_233894667.1 516160..517140(+) (rpoS) [Vibrio kanaloae strain KH-4]
MSISNAVTKEEFDLVQVTTEPETLGKVKRTVTKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide


Download         Length: 981 bp        

>NTDB_id=640242 LWM38_RS02535 WP_233894667.1 516160..517140(+) (rpoS) [Vibrio kanaloae strain KH-4]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTGTCCAAGTAACCACGGAACCGGAAACACTTGGAAAAGT
AAAGCGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGTTGAAGTTACGTCTAAAAGCCTAGATGCCACTCAACTTT
ATCTAGGCGAGATCGGTTTCTCACCACTATTAACCGCAGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGTAAACGCATGATAGAAAGTAACCTGCGTTTAGTGGTAAAGATTTCACGTCGTTATAGCAATCGCGGTTT
AGCACTTCTCGATCTAATTGAAGAAGGCAACTTAGGTTTGATTCGCGCCGTAGAGAAGTTTGACCCAGAACGTGGTTTCC
GTTTTTCGACTTACGCGACATGGTGGATTCGTCAAACTATTGAACGTGCGTTGATGAATCAGACTCGGACTATCCGTTTA
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACTGCAAGAGAGCTATCACAAAAGCTTGACCATGAACCAAC
GGCAGAAGAGATCGCTTCTAAGCTAGATAAACCCGTTGGTGATGTGAGCAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CTGTAGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCAGACATCAACAATTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAATTCGTTGATATTCTGGCTTGATGAGCTTAATCCGAAGCAGAAAGAGGTGCT
TGCACGTCGATTTGGATTGCTTGGTTATGAACCGTCAACACTAGAAGAAGTTGGTCGTGAAATCAGCCTGACTCGTGAGC
GTGTTCGTCAAATTCAAGTTGAAGGTTTGCGCCGTTTACGTGAGATTCTGATCAAACAAGGTCTGAACATGGAAAACCTG
TTCAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(167-240)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70 region 2 (Sigma70_r2)

(87-156)

Sigma-70, region 4 (Sigma70_r4)

(255-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

80.178

100

0.831