Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LS684_RS08615 Genome accession   NZ_CP089997
Coordinates   1701173..1702213 (+) Length   346 a.a.
NCBI ID   WP_284701587.1    Uniprot ID   -
Organism   Cytobacillus spongiae strain CY-G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1696173..1707213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LS684_RS08590 (LS684_08590) - 1696768..1697025 (+) 258 WP_233811194.1 DUF3243 domain-containing protein -
  LS684_RS08595 (LS684_08595) - 1697278..1698069 (+) 792 WP_233811195.1 YmfK family protein -
  LS684_RS08600 (LS684_08600) - 1698082..1698993 (+) 912 WP_349293114.1 RodZ domain-containing protein -
  LS684_RS08605 (LS684_08605) pgsA 1699050..1699628 (+) 579 WP_233811197.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LS684_RS08610 (LS684_08610) cinA 1699641..1700876 (+) 1236 WP_233811198.1 competence/damage-inducible protein A Machinery gene
  LS684_RS08615 (LS684_08615) recA 1701173..1702213 (+) 1041 WP_284701587.1 recombinase RecA Machinery gene
  LS684_RS08620 (LS684_08620) rny 1702555..1704114 (+) 1560 WP_233811582.1 ribonuclease Y -
  LS684_RS08625 (LS684_08625) - 1704316..1705113 (+) 798 WP_233811199.1 TIGR00282 family metallophosphoesterase -
  LS684_RS08630 (LS684_08630) spoVS 1705476..1705736 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37615.80 Da        Isoelectric Point: 4.8474

>NTDB_id=639910 LS684_RS08615 WP_284701587.1 1701173..1702213(+) (recA) [Cytobacillus spongiae strain CY-G]
MSDRQAALEMALKQIEKQFGKGSIMKLGEQTETRISTAPSGSLALDAALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQATGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISKEGEIIDLGSELDIVQKSGSWYSYNEERLGQGRENAKQFLKENPDIRLEIQKQ
IREHYGLDGEKVVSPEEDPEQFELID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=639910 LS684_RS08615 WP_284701587.1 1701173..1702213(+) (recA) [Cytobacillus spongiae strain CY-G]
GTGAGTGATCGTCAAGCAGCCCTCGAAATGGCACTAAAGCAAATCGAAAAGCAATTTGGAAAAGGCTCTATTATGAAATT
AGGAGAACAGACTGAAACAAGAATTTCAACTGCTCCTAGTGGTTCTCTAGCATTAGATGCTGCCCTTGGTGTGGGTGGAT
ATCCAAGAGGTCGTATTATTGAAATTTATGGTCCAGAGAGCTCTGGTAAAACAACCGTTGCATTGCATGCAATTGCAGAG
GTTCAAGCAACAGGTGGTCAAGCAGCATTTATCGATGCCGAGCATGCTTTAGACCCAGTCTACGCTCAAAAGCTTGGAGT
AAACATCGATGAACTATTACTCTCTCAGCCTGATACAGGAGAGCAAGCACTTGAGATTGCTGAAGCACTTGTACGAAGCG
GGGCAGTTGATATATTAGTCATTGACTCAGTTGCCGCATTAGTACCGAAAGCAGAAATCGAAGGAGAAATGGGAGATTCA
CACGTAGGTTTACAAGCTCGTCTAATGTCTCAAGCACTTCGTAAGCTTTCTGGTGCAATTAACAAATCGAAAACGATCGC
GATTTTTATCAACCAAATTCGTGAAAAAGTAGGAGTAATGTTTGGTAATCCTGAAACAACTCCTGGTGGACGTGCGCTGA
AATTCTATTCTTCTGTACGCTTAGAAGTTCGCAGAGCTGAAACGTTAAAACAAGGAAATGACATGGTTGGAAATAAAACA
AAGATCAAAGTTGTTAAGAATAAGGTGGCTCCTCCGTTCCGTGTAGCTGAAGTAGATATTATGTACGGCGAAGGAATTTC
GAAAGAAGGAGAAATCATCGATTTAGGTTCTGAGCTAGACATCGTTCAAAAGAGTGGTTCATGGTACTCTTACAATGAGG
AACGTTTAGGTCAAGGTCGTGAAAACGCCAAGCAATTCCTTAAGGAGAATCCTGACATTCGCCTTGAGATTCAAAAGCAA
ATCCGTGAGCATTACGGCTTAGATGGTGAAAAAGTCGTAAGTCCTGAAGAAGATCCGGAGCAATTTGAATTAATCGACTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

92.192

96.243

0.887
  recA Latilactobacillus sakei subsp. sakei 23K

75

97.11

0.728
  recA Streptococcus pneumoniae R6

68.986

99.711

0.688
  recA Streptococcus pneumoniae Rx1

68.986

99.711

0.688
  recA Streptococcus pneumoniae D39

68.986

99.711

0.688
  recA Streptococcus pneumoniae TIGR4

68.986

99.711

0.688
  recA Streptococcus mitis NCTC 12261

68.421

98.844

0.676
  recA Streptococcus mitis SK321

68.129

98.844

0.673
  recA Streptococcus mutans UA159

68.693

95.087

0.653
  recA Streptococcus pyogenes NZ131

68.598

94.798

0.65
  recA Lactococcus lactis subsp. cremoris KW2

67.273

95.376

0.642
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.422

97.977

0.621
  recA Neisseria gonorrhoeae MS11

65.749

94.509

0.621
  recA Neisseria gonorrhoeae MS11

65.749

94.509

0.621
  recA Neisseria gonorrhoeae strain FA1090

65.749

94.509

0.621
  recA Ralstonia pseudosolanacearum GMI1000

65.749

94.509

0.621
  recA Helicobacter pylori strain NCTC11637

61.988

98.844

0.613
  recA Helicobacter pylori 26695

61.988

98.844

0.613
  recA Vibrio cholerae strain A1552

65.421

92.775

0.607
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.421

92.775

0.607
  recA Glaesserella parasuis strain SC1401

60.116

100

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

94.509

0.598
  recA Acinetobacter baumannii D1279779

60.704

98.555

0.598
  recA Pseudomonas stutzeri DSM 10701

63.75

92.486

0.59
  recA Acinetobacter baylyi ADP1

62.733

93.064

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.562

92.486

0.569