Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LS684_RS08610 Genome accession   NZ_CP089997
Coordinates   1699641..1700876 (+) Length   411 a.a.
NCBI ID   WP_233811198.1    Uniprot ID   -
Organism   Cytobacillus spongiae strain CY-G     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1694641..1705876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LS684_RS08585 (LS684_08585) - 1695898..1696623 (+) 726 WP_233811193.1 SDR family oxidoreductase -
  LS684_RS08590 (LS684_08590) - 1696768..1697025 (+) 258 WP_233811194.1 DUF3243 domain-containing protein -
  LS684_RS08595 (LS684_08595) - 1697278..1698069 (+) 792 WP_233811195.1 YmfK family protein -
  LS684_RS08600 (LS684_08600) - 1698082..1698993 (+) 912 WP_349293114.1 RodZ domain-containing protein -
  LS684_RS08605 (LS684_08605) pgsA 1699050..1699628 (+) 579 WP_233811197.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LS684_RS08610 (LS684_08610) cinA 1699641..1700876 (+) 1236 WP_233811198.1 competence/damage-inducible protein A Machinery gene
  LS684_RS08615 (LS684_08615) recA 1701173..1702213 (+) 1041 WP_284701587.1 recombinase RecA Machinery gene
  LS684_RS08620 (LS684_08620) rny 1702555..1704114 (+) 1560 WP_233811582.1 ribonuclease Y -
  LS684_RS08625 (LS684_08625) - 1704316..1705113 (+) 798 WP_233811199.1 TIGR00282 family metallophosphoesterase -
  LS684_RS08630 (LS684_08630) spoVS 1705476..1705736 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44646.11 Da        Isoelectric Point: 4.7752

>NTDB_id=639909 LS684_RS08610 WP_233811198.1 1699641..1700876(+) (cinA) [Cytobacillus spongiae strain CY-G]
MNAEIIAVGSELLLGQIVNTNARFLSKHLAEIGINVFYHTVVGDNANRLKSTIEIAEQRSDLIIFTGGLGPTKDDLTKET
IAKHIGKELVMDEAALTSIEQYFVQVNRQMTDNNRKQALILEDSTVLKNDHGMAPGMLLRTNTHMYMLLPGPPKEMEPMF
FNYGLLAIKGQLQSDDRIVSRVLRFFGIGEAALETEIEDLIDSQTNPTIAPLAADGEVTLRLTAKHQSEDTANRLLDEVE
EKILSRVGDFFYGYNDTSLISELSKQLKSKNLTIACAESLTGGLFQQELTAIPGSGDLLAGGIVCYTNDVKTKLLQVKES
TIQEFGVVSEPCAIELAENVQKLLGSDIGISFTGVAGPDELEGKPVGTVYIGIAINGKPTIAEKLSLAGTRSGIRSRTVK
YGSSLLLKSLT

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=639909 LS684_RS08610 WP_233811198.1 1699641..1700876(+) (cinA) [Cytobacillus spongiae strain CY-G]
ATGAATGCTGAAATTATTGCTGTTGGTTCTGAGTTGTTGTTAGGGCAAATTGTGAATACAAATGCTCGCTTTTTATCAAA
GCATCTAGCAGAGATCGGAATCAATGTGTTTTATCATACGGTTGTAGGGGATAATGCGAACCGGTTGAAATCTACAATTG
AAATAGCAGAACAGCGATCAGACCTGATTATCTTTACAGGTGGACTTGGACCAACGAAGGATGACTTAACAAAGGAAACG
ATTGCAAAGCATATCGGTAAAGAACTAGTTATGGATGAAGCTGCCCTTACATCAATAGAACAATACTTTGTCCAGGTTAA
TCGGCAAATGACGGATAATAATCGCAAGCAGGCCCTTATATTAGAGGATTCAACCGTGCTTAAAAATGATCATGGGATGG
CACCAGGAATGTTGCTGCGAACGAATACACATATGTATATGCTTTTGCCAGGTCCTCCAAAAGAAATGGAACCGATGTTT
TTCAATTATGGGCTTTTGGCTATTAAAGGACAGCTTCAGTCGGATGATCGGATTGTTTCGCGGGTATTGCGCTTTTTCGG
TATTGGAGAAGCGGCACTTGAAACGGAGATTGAAGACCTAATAGATAGTCAAACAAACCCAACAATAGCACCGCTTGCTG
CTGATGGAGAGGTTACCCTTAGGCTAACGGCCAAGCATCAATCAGAAGACACAGCAAACAGATTACTGGATGAAGTCGAG
GAGAAAATCCTTTCTCGAGTAGGGGACTTTTTTTACGGTTATAATGATACATCTCTTATCAGCGAGCTTTCGAAGCAATT
GAAGAGTAAAAATCTCACTATCGCTTGTGCAGAAAGCTTAACAGGGGGACTATTTCAACAAGAATTGACCGCCATTCCTG
GTTCGGGAGATCTATTAGCTGGAGGCATCGTATGTTATACGAACGACGTGAAAACGAAATTGCTTCAGGTAAAAGAGAGT
ACCATACAAGAGTTTGGTGTAGTAAGTGAACCATGTGCGATTGAACTTGCGGAAAACGTCCAAAAATTGCTCGGATCCGA
CATCGGTATTAGCTTTACGGGTGTTGCAGGCCCTGATGAATTAGAAGGTAAGCCTGTTGGAACGGTCTATATTGGCATCG
CCATCAATGGAAAACCTACTATCGCAGAAAAATTAAGCTTAGCAGGGACTCGCAGCGGCATTCGCAGCCGAACGGTTAAA
TATGGAAGTAGTCTCTTACTAAAGTCCCTTACTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-161)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

63.235

99.27

0.628
  cinA Streptococcus mitis SK321

48.219

100

0.494
  cinA Streptococcus mitis NCTC 12261

47.619

100

0.487
  cinA Streptococcus pneumoniae TIGR4

47.619

100

0.487
  cinA Streptococcus pneumoniae Rx1

47.381

100

0.484
  cinA Streptococcus pneumoniae R6

47.381

100

0.484
  cinA Streptococcus pneumoniae D39

47.143

100

0.482
  cinA Streptococcus mutans UA159

46.024

100

0.465
  cinA Streptococcus suis isolate S10

42.063

91.971

0.387