Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LUM42_RS02610 Genome accession   NZ_CP089603
Coordinates   542858..543910 (+) Length   350 a.a.
NCBI ID   WP_004723845.1    Uniprot ID   A0A0Q2SF52
Organism   Vibrio furnissii strain VFN3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 537858..548910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUM42_RS02595 (LUM42_02595) rpoS 538493..539482 (+) 990 WP_004723838.1 RNA polymerase sigma factor RpoS Regulator
  LUM42_RS02600 (LUM42_02600) mutS 539551..542112 (-) 2562 WP_143680212.1 DNA mismatch repair protein MutS -
  LUM42_RS02605 (LUM42_02605) pncC 542197..542685 (+) 489 WP_232658439.1 nicotinamide-nucleotide amidase -
  LUM42_RS02610 (LUM42_02610) recA 542858..543910 (+) 1053 WP_004723845.1 recombinase RecA Machinery gene
  LUM42_RS02615 (LUM42_02615) recX 544005..544475 (+) 471 WP_014205775.1 recombination regulator RecX -
  LUM42_RS02620 (LUM42_02620) alaS 544651..547233 (+) 2583 WP_158108066.1 alanine--tRNA ligase -
  LUM42_RS02625 (LUM42_02625) - 547440..548627 (+) 1188 WP_038150576.1 aspartate kinase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 38076.59 Da        Isoelectric Point: 4.9925

>NTDB_id=638344 LUM42_RS02610 WP_004723845.1 542858..543910(+) (recA) [Vibrio furnissii strain VFN3]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLELIS
AAQREGKTCAFIDAEHALDPVYARRLGVKIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGSIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIELGVKHKLVEKAGAWYSYNGDKIGQGKANACKYLRENPEVAKFIDG
KLREMLLSPEQVEVAEEPEFGTVPEQQEEF

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=638344 LUM42_RS02610 WP_004723845.1 542858..543910(+) (recA) [Vibrio furnissii strain VFN3]
ATGGACGAGAACAAACAGAAGGCTCTGGCCGCGGCCCTGGGTCAAATTGAAAAGCAATTCGGTAAAGGTTCTATCATGCG
CTTGGGTGACAACCGCACGATGGACGTAGAAACGATTTCTACTGGTTCACTTTCTCTGGATATCGCATTGGGTGCTGGTG
GCCTGCCAATGGGCCGTATCGTGGAAATCTACGGTCCAGAATCGTCGGGTAAAACCACGCTGACTCTGGAGCTGATTTCA
GCGGCGCAACGCGAAGGTAAAACTTGTGCTTTCATCGATGCAGAGCACGCTCTGGATCCGGTTTACGCTCGTCGTCTGGG
CGTGAAAATTGATGAGCTGCTGGTGTCTCAGCCAGATACCGGTGAACAAGCGCTGGAAATCTGTGACGCGTTGGCGCGTT
CAGGTGCTGTTGACGTGATCGTGGTTGACTCGGTTGCCGCATTGACGCCAAAAGCGGAGATTGAAGGTGAAATGGGCGAC
AGCCACATGGGTCTTCAAGCGCGTATGCTGTCTCAAGCGATGCGTAAACTGACAGGTAACCTGAAACAGTCAAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACCACAACCGGTGGTAACGCAC
TGAAATTCTATGCTTCTGTTCGTTTGGACATTCGTCGTACGGGTTCAATTAAAGAAGGCGATGAAGTGGTGGGCAACGAA
ACGCGCATCAAAGTCGTGAAGAACAAAATTGCAGCACCGTTTAAAGAAGCCAACACGCAAATCATGTACGGCCAAGGCTT
TAACCGTGAAGGTGAGCTGATTGAACTGGGCGTGAAGCACAAGCTGGTCGAAAAAGCAGGTGCTTGGTACAGCTACAACG
GCGACAAAATTGGTCAAGGTAAAGCGAACGCATGCAAATACCTGCGCGAAAATCCTGAAGTGGCGAAGTTCATTGACGGC
AAACTGCGTGAGATGCTGCTAAGCCCTGAACAAGTGGAAGTTGCGGAAGAGCCAGAGTTTGGCACCGTTCCAGAACAACA
AGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2SF52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

90.652

100

0.914
  recA Vibrio cholerae strain A1552

90.652

100

0.914
  recA Acinetobacter baumannii D1279779

71.594

98.571

0.706
  recA Pseudomonas stutzeri DSM 10701

74.924

93.429

0.7
  recA Acinetobacter baylyi ADP1

70.809

98.857

0.7
  recA Glaesserella parasuis strain SC1401

72.086

93.143

0.671
  recA Ralstonia pseudosolanacearum GMI1000

70.552

93.143

0.657
  recA Neisseria gonorrhoeae MS11

68.712

93.143

0.64
  recA Neisseria gonorrhoeae MS11

68.712

93.143

0.64
  recA Neisseria gonorrhoeae strain FA1090

68.712

93.143

0.64
  recA Streptococcus mitis SK321

59.544

100

0.597
  recA Streptococcus mitis NCTC 12261

59.259

100

0.594
  recA Helicobacter pylori 26695

59.706

97.143

0.58
  recA Streptococcus pneumoniae D39

62.848

92.286

0.58
  recA Streptococcus pneumoniae TIGR4

62.848

92.286

0.58
  recA Streptococcus pneumoniae R6

62.848

92.286

0.58
  recA Streptococcus pneumoniae Rx1

62.848

92.286

0.58
  recA Helicobacter pylori strain NCTC11637

59.412

97.143

0.577
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.323

91.143

0.577
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

91.714

0.571
  recA Streptococcus mutans UA159

61.538

92.857

0.571
  recA Streptococcus pyogenes NZ131

61.231

92.857

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

56.125

100

0.563
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.215

94.571

0.56
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.62

89.429

0.56
  recA Lactococcus lactis subsp. cremoris KW2

60.372

92.286

0.557