Detailed information NTG0638342

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LUM42_RS02595
• Genome accession: NZ_CP089603
• Coordinates: 538493..539482 (+)
• Length: 329 a.a.
• NCBI ID: WP_004723838.1
• Uniprot ID: A0A0Q2V080
• Organism: Vibrio furnissii strain VFN3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 533493..544482

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LUM42_RS02560 (LUM42_02560)	ftsB	533508..533792 (+)	285	WP_004723824.1	cell division protein FtsB	-
LUM42_RS02565 (LUM42_02565)	ispD	533789..534502 (+)	714	WP_004723825.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
LUM42_RS02570 (LUM42_02570)	ispF	534552..535028 (+)	477	WP_232658438.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
LUM42_RS02575 (LUM42_02575)	truD	535060..536106 (+)	1047	WP_004723830.1	tRNA pseudouridine(13) synthase TruD	-
LUM42_RS02580 (LUM42_02580)	surE	536099..536866 (+)	768	WP_004723832.1	5'/3'-nucleotidase SurE	-
LUM42_RS02585 (LUM42_02585)	-	536859..537485 (+)	627	WP_014205779.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
LUM42_RS02590 (LUM42_02590)	nlpD	537485..538420 (+)	936	WP_014205778.1	murein hydrolase activator NlpD	-
LUM42_RS02595 (LUM42_02595)	rpoS	538493..539482 (+)	990	WP_004723838.1	RNA polymerase sigma factor RpoS	Regulator
LUM42_RS02600 (LUM42_02600)	mutS	539551..542112 (-)	2562	WP_143680212.1	DNA mismatch repair protein MutS	-
LUM42_RS02605 (LUM42_02605)	pncC	542197..542685 (+)	489	WP_232658439.1	nicotinamide-nucleotide amidase	-
LUM42_RS02610 (LUM42_02610)	recA	542858..543910 (+)	1053	WP_004723845.1	recombinase RecA	Machinery gene
LUM42_RS02615 (LUM42_02615)	recX	544005..544475 (+)	471	WP_014205775.1	recombination regulator RecX	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37741.44 Da
• Isoelectric Point: 4.4379

>NTDB_id=638342 LUM42_RS02595 WP_004723838.1 538493..539482(+) (rpoS) [Vibrio furnissii strain VFN3]
MSISNTATKVEEFEFDSEAVNNAATDQELTTNDNDQSEEVREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNS
DPEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNM
ESLFNVEND

Nucleotide

• Length: 990 bp

>NTDB_id=638342 LUM42_RS02595 WP_004723838.1 538493..539482(+) (rpoS) [Vibrio furnissii strain VFN3]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGAGTTCGATTCAGAAGCCGTGAATAACGCGGCGACCGACCA
AGAACTGACTACCAACGATAATGACCAATCTGAAGAGGTTCGTGAAGAGTTTGATGCTTCCACGAAAAGCCTCGATGCCA
CTCAGATGTATCTGAGCGAGATTGGTTTCTCACCCTTATTAACCGCCGAAGAAGAAGTGCTCTATGCTCGCCGCGCCTTG
CGTGGTGATGAGGCTGCGCGCAAACGCATGATCGAGAGCAACTTACGTCTGGTGGTCAAAATCTCTCGCCGTTATAGCAA
TCGGGGCTTGGCACTGCTTGATCTGATTGAAGAGGGTAACCTTGGCCTCATTCGTGCAGTAGAGAAATTCGACCCAGAAC
GCGGTTTCCGTTTTTCGACTTATGCTACCTGGTGGATTCGTCAGACCATTGAACGTGCCCTGATGAACCAGACTCGTACG
ATTCGTTTACCAATTCATGTGGTGAAAGAGCTGAACATCTACTTGCGTACTGCGCGTGAGCTGTCTCAGAAACTCGACCA
CGAACCGACCGCGGAAGAAATTGCCGTGGAACTGGATAAGCCAGTGGATGATGTCAGCAAAATGCTCCGTCTGAACGAGC
GCATTAGCTCCGTCGATACGCCAATTGGCGGCGATGGTGACAAAGCATTGCTCGATATCATCCCTGATATCAACAATTCC
GACCCTGAAGTCTCCACACAGGATGACGATATTCGTGATTCGCTGGTGGCTTGGCTCGATGAGCTCAATCCGAAACAGAA
AGAAGTGCTGGCCCGCCGTTTTGGCTTGTTGGGCTATGAACCATCAACGTTGGAAGAAGTGGGCCGCGAGATCAATTTGA
CCCGTGAACGTGTGCGTCAAATTCAGGTGGAAGGCTTGCGCCGACTAAGAGAAATCCTGATGAAACAGGGTTTGAACATG
GAATCGCTGTTTAATGTGGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A0A0Q2V080

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	88.024	100	0.894