Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LUS72_RS18450 Genome accession   NZ_CP089518
Coordinates   3571420..3572445 (-) Length   341 a.a.
NCBI ID   WP_264447773.1    Uniprot ID   -
Organism   Bacillus cereus strain PT1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3566420..3577445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUS72_RS18430 - 3567003..3567926 (-) 924 WP_264447767.1 dipeptidase -
  LUS72_RS18435 spoVS 3567986..3568246 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  LUS72_RS18440 - 3568396..3569190 (-) 795 WP_001221088.1 TIGR00282 family metallophosphoesterase -
  LUS72_RS18445 rny 3569366..3570931 (-) 1566 WP_071746754.1 ribonuclease Y -
  LUS72_RS18450 recA 3571420..3572445 (-) 1026 WP_264447773.1 recombinase RecA Machinery gene
  LUS72_RS18455 cinA 3572589..3573827 (-) 1239 WP_097830990.1 competence/damage-inducible protein A Machinery gene
  LUS72_RS18460 pgsA 3573849..3574427 (-) 579 WP_097830989.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LUS72_RS18465 - 3574491..3575402 (-) 912 WP_097830988.1 helix-turn-helix domain-containing protein -
  LUS72_RS18470 - 3575424..3576209 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  LUS72_RS18475 - 3576349..3576597 (-) 249 WP_000114449.1 DUF3243 domain-containing protein -
  LUS72_RS18480 ymfI 3576673..3577386 (-) 714 WP_097830987.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37099.06 Da        Isoelectric Point: 4.9833

>NTDB_id=637884 LUS72_RS18450 WP_264447773.1 3571420..3572445(-) (recA) [Bacillus cereus strain PT1]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERRISTISSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEDRLGQGRENSKQFLKENTDLREEIAFF
VREHHGIGEDSGVEDTEDSTL

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=637884 LUS72_RS18450 WP_264447773.1 3571420..3572445(-) (recA) [Bacillus cereus strain PT1]
ATGAGTGATCGTCAAGCGGCATTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAACAAGCGGAGCGTAGAATTTCTACAATTTCAAGTGGTTCTTTAGCACTAGATGTGGCACTAGGGGTAGGCGGAT
ACCCACGTGGCCGTATTATTGAAATTTACGGACCTGAAAGTTCAGGTAAAACAACAGTTTCATTACATGCAATCGCGGAA
GTACAGCGACAAGGTGGACAAGCAGCATTTATCGATGCGGAGCATGCGATGGATCCTGTTTATGCACAAAAATTAGGTGT
TAACATCGATGAATTACTATTATCACAGCCTGATACAGGGGAGCAAGGACTAGAAATCGCAGAAGCACTTGTACGAAGTG
GCGCGGTTGATATTATCGTAATTGACTCTGTAGCAGCTCTTGTACCGAAAGCTGAGATCGAAGGGGACATGGGTGACTCT
CACGTTGGTTTACAAGCACGTTTAATGTCACAAGCACTTCGTAAACTTTCAGGTGCAATCAACAAATCAAAAACAATCGC
AATCTTTATCAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGAAACCCAGAAACAACTCCAGGTGGTCGTGCGTTGA
AATTCTATTCAACTGTCCGTCTTGAAGTGCGTCGTGCTGAGCAGTTAAAACAAGGTAACGACATCGTTGGTAATAAAACG
AAAGTAAAAGTAGTTAAAAATAAAGTAGCACCACCATTCCGTGTTGCTGAAGTTGATATTATGTACGGAGAAGGTATTTC
AAGAGAAGGTGAAATCTTAGATATGGCTTCTGAACTTGATATCGTGCAAAAGAGTGGTGCTTGGTACTCTTATAATGAAG
ATCGCTTAGGACAAGGTCGTGAGAATTCGAAGCAATTCTTAAAAGAGAATACGGATTTAAGAGAGGAAATTGCCTTCTTT
GTTCGTGAACATCATGGAATTGGTGAAGACTCTGGTGTTGAAGACACGGAAGATTCAACCCTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.486

97.654

0.845
  recA Latilactobacillus sakei subsp. sakei 23K

75.841

95.894

0.727
  recA Streptococcus pneumoniae D39

67.93

100

0.683
  recA Streptococcus pneumoniae Rx1

67.93

100

0.683
  recA Streptococcus pneumoniae R6

67.93

100

0.683
  recA Streptococcus pneumoniae TIGR4

67.93

100

0.683
  recA Streptococcus pyogenes NZ131

69.817

96.188

0.672
  recA Streptococcus mutans UA159

67.155

100

0.672
  recA Streptococcus mitis SK321

69.091

96.774

0.669
  recA Streptococcus mitis NCTC 12261

69.091

96.774

0.669
  recA Lactococcus lactis subsp. cremoris KW2

66.964

98.534

0.66
  recA Neisseria gonorrhoeae strain FA1090

64.307

99.413

0.639
  recA Neisseria gonorrhoeae MS11

64.307

99.413

0.639
  recA Neisseria gonorrhoeae MS11

64.307

99.413

0.639
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.798

98.827

0.63
  recA Ralstonia pseudosolanacearum GMI1000

67.732

91.789

0.622
  recA Acinetobacter baumannii D1279779

60.526

100

0.607
  recA Helicobacter pylori 26695

62.614

96.481

0.604
  recA Helicobacter pylori strain NCTC11637

62.614

96.481

0.604
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.863

94.135

0.601
  recA Vibrio cholerae strain A1552

63.863

94.135

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

95.894

0.601
  recA Glaesserella parasuis strain SC1401

63.636

93.548

0.595
  recA Acinetobacter baylyi ADP1

62.112

94.428

0.587
  recA Pseudomonas stutzeri DSM 10701

62.187

93.842

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.443

92.669

0.56