Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LUS72_RS18455 Genome accession   NZ_CP089518
Coordinates   3572589..3573827 (-) Length   412 a.a.
NCBI ID   WP_097830990.1    Uniprot ID   -
Organism   Bacillus cereus strain PT1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 3567589..3578827
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUS72_RS18435 spoVS 3567986..3568246 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  LUS72_RS18440 - 3568396..3569190 (-) 795 WP_001221088.1 TIGR00282 family metallophosphoesterase -
  LUS72_RS18445 rny 3569366..3570931 (-) 1566 WP_071746754.1 ribonuclease Y -
  LUS72_RS18450 recA 3571420..3572445 (-) 1026 WP_264447773.1 recombinase RecA Machinery gene
  LUS72_RS18455 cinA 3572589..3573827 (-) 1239 WP_097830990.1 competence/damage-inducible protein A Machinery gene
  LUS72_RS18460 pgsA 3573849..3574427 (-) 579 WP_097830989.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LUS72_RS18465 - 3574491..3575402 (-) 912 WP_097830988.1 helix-turn-helix domain-containing protein -
  LUS72_RS18470 - 3575424..3576209 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  LUS72_RS18475 - 3576349..3576597 (-) 249 WP_000114449.1 DUF3243 domain-containing protein -
  LUS72_RS18480 ymfI 3576673..3577386 (-) 714 WP_097830987.1 elongation factor P 5-aminopentanone reductase -
  LUS72_RS18485 yfmH 3577491..3578777 (-) 1287 WP_264447781.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45533.73 Da        Isoelectric Point: 4.9528

>NTDB_id=637885 LUS72_RS18455 WP_097830990.1 3572589..3573827(-) (cinA) [Bacillus cereus strain PT1]
MNAEIIAVGTELLLGQIANTNAQFLSEKLASIGINVYYHTVVGDNNKRLQKAIELAEERADMLIFTGGLGPTKDDLTKET
IASSLGEELVYDETALTSISDYFKRTGREFTENNKKQALVLSGSTVFANDHGMAPGMGLNKNGKVYILLPGPPKEMKPMY
VSYVEPFLRNFTTGENIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLANDGEVTLRLTAKHHDANEAEKLIQHVEN
LILERVGEFFYGYDQDFLHYKAIELLKEKGLTLACAESLTGGLFGNQVTENAGVSSVFKGGVVCYQNEVKQQILHVPEEV
LRTDGAVSKQCARYLAENVKELLKADIGISFTGVAGPDASEYKEPGTVFVGLAIKDEPTEVFPLNLSGSRQQIRERSTKY
GFYHLYKKLEEI

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=637885 LUS72_RS18455 WP_097830990.1 3572589..3573827(-) (cinA) [Bacillus cereus strain PT1]
ATGAATGCTGAGATTATTGCGGTTGGAACTGAATTGTTACTTGGACAAATTGCAAATACAAATGCCCAGTTTTTATCTGA
AAAGTTAGCTTCAATTGGAATAAATGTGTACTATCATACTGTTGTGGGTGATAATAACAAGCGATTACAAAAGGCAATTG
AATTGGCTGAAGAGCGCGCTGATATGCTTATTTTTACGGGCGGATTAGGGCCGACAAAAGACGATTTGACGAAAGAAACA
ATAGCGTCTAGCTTAGGTGAAGAGCTTGTGTATGATGAAACAGCATTAACATCTATAAGCGATTATTTTAAGCGTACAGG
CCGTGAATTTACGGAAAATAATAAAAAGCAGGCGCTCGTTCTAAGTGGATCGACTGTGTTTGCGAATGATCACGGTATGG
CGCCTGGCATGGGGTTAAATAAAAACGGAAAAGTTTATATTTTATTACCAGGGCCACCAAAAGAAATGAAGCCGATGTAT
GTAAGTTACGTAGAGCCTTTTTTACGTAACTTTACAACAGGGGAAAATATTTATTCTCGCGTTCTTCGCTTTTTCGGTAT
TGGGGAATCTCAATTAGAGGTAAAAGTTCAAGATTTAATTGATGGACAAACGAACCCGACCATTGCACCACTCGCAAATG
ATGGAGAAGTGACATTACGTTTAACTGCAAAACATCATGATGCGAATGAGGCGGAGAAACTAATTCAACATGTGGAAAAT
TTGATTTTAGAAAGAGTAGGAGAATTTTTCTATGGATATGACCAAGATTTTCTTCATTACAAGGCAATAGAGTTATTGAA
GGAAAAAGGGTTAACTTTAGCATGTGCAGAAAGTTTAACAGGCGGTCTCTTTGGAAATCAAGTAACAGAAAATGCGGGTG
TTTCGTCTGTGTTTAAAGGCGGTGTCGTTTGTTATCAAAATGAAGTAAAGCAACAAATTTTACATGTACCTGAAGAAGTG
TTACGTACTGACGGCGCGGTTAGTAAACAATGTGCTCGTTATCTTGCTGAAAATGTAAAGGAACTGTTAAAAGCAGATAT
CGGAATTAGTTTTACTGGGGTGGCAGGACCTGATGCTTCAGAGTATAAAGAACCAGGAACAGTATTTGTTGGATTGGCGA
TTAAGGATGAACCGACTGAAGTCTTCCCTCTTAATTTAAGTGGAAGTCGTCAACAAATTAGAGAGCGCTCTACAAAATAT
GGGTTTTATCATTTATACAAAAAACTAGAAGAGATATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(259-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

59.024

99.515

0.587
  cinA Streptococcus pneumoniae TIGR4

47.733

100

0.485
  cinA Streptococcus mitis SK321

47.494

100

0.483
  cinA Streptococcus pneumoniae Rx1

47.255

100

0.481
  cinA Streptococcus pneumoniae R6

47.255

100

0.481
  cinA Streptococcus pneumoniae D39

47.017

100

0.478
  cinA Streptococcus mitis NCTC 12261

46.778

100

0.476
  cinA Streptococcus mutans UA159

46.305

98.544

0.456
  cinA Streptococcus suis isolate S10

41.91

91.505

0.383