Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LTQ54_RS11275 Genome accession   NZ_CP089203
Coordinates   2432889..2433929 (+) Length   346 a.a.
NCBI ID   WP_243578780.1    Uniprot ID   -
Organism   Vibrio splendidus strain 2_C04b     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2427889..2438929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LTQ54_RS11260 (LTQ54_11260) rpoS 2428431..2429411 (+) 981 WP_004735404.1 RNA polymerase sigma factor RpoS Regulator
  LTQ54_RS11265 (LTQ54_11265) mutS 2429569..2432130 (-) 2562 WP_243578778.1 DNA mismatch repair protein MutS -
  LTQ54_RS11270 (LTQ54_11270) pncC 2432255..2432749 (+) 495 WP_243578779.1 nicotinamide-nucleotide amidase -
  LTQ54_RS11275 (LTQ54_11275) recA 2432889..2433929 (+) 1041 WP_243578780.1 recombinase RecA Machinery gene
  LTQ54_RS11280 (LTQ54_11280) alaS 2434254..2436836 (+) 2583 WP_243578781.1 alanine--tRNA ligase -
  LTQ54_RS11285 (LTQ54_11285) - 2437057..2438238 (+) 1182 WP_080583151.1 aspartate kinase -
  LTQ54_RS11290 (LTQ54_11290) csrA 2438331..2438528 (+) 198 WP_004415691.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37349.88 Da        Isoelectric Point: 5.2020

>NTDB_id=635712 LTQ54_RS11275 WP_243578780.1 2432889..2433929(+) (recA) [Vibrio splendidus strain 2_C04b]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQRVGKTCAFVDAEHALDPIYAQKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVLVIDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMAIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE
TRIKVVKNKIAAPFKQAETQILYGKGFNREGELIDLGVKNKLVEKAGAWYSYKGNKIGQGKSNSCKHLRENPEIALELDT
KLRELLLTPAVLEEKGAEKEEENEEL

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=635712 LTQ54_RS11275 WP_243578780.1 2432889..2433929(+) (recA) [Vibrio splendidus strain 2_C04b]
ATGGACGAGAATAAACAAAAAGCGTTAGCTGCAGCCCTTGGTCAGATTGAAAAGCAATTTGGTAAAGGTTCTATCATGCG
TCTTGGTGATAACCGCACAATGGACGTAGAAACTATTTCTACAGGTTCTCTATCTCTAGATATCGCACTAGGTGCTGGTG
GCTTACCGATGGGACGTATCGTTGAAGTTTACGGTCCAGAATCATCAGGTAAAACAACGCTAACGCTTGAGCTTATTGCT
GCAGCGCAGAGAGTGGGTAAAACGTGTGCATTCGTGGATGCGGAACACGCACTTGACCCTATCTACGCTCAAAAGTTGGG
TGTTGATATCGATGCTTTGCTTGTATCTCAACCTGATACCGGTGAACAAGCTCTAGAAATCTGTGATGCACTGGCTCGTT
CAGGTGCTATCGATGTTCTTGTTATTGACTCGGTTGCTGCACTAACACCTAAAGCTGAGATCGAAGGCGAAATGGGCGAT
AGCCACATGGGTCTTCAAGCGCGTATGCTTTCTCAAGCAATGCGTAAGCTGACAGGTAACCTTAAACAGTCTAACTGTAT
GGCTATCTTCATTAACCAAATTCGTATGAAAATTGGTGTAATGTTCGGTAACCCAGAAACAACCACAGGTGGTAATGCAC
TTAAGTTCTACGCATCTGTTCGTCTTGATATTCGCCGTACTGGTGCAATCAAAGATGGTGATGAAGTTGTTGGTAACGAG
ACTCGTATCAAGGTTGTTAAGAACAAGATTGCTGCACCATTCAAACAAGCTGAAACTCAAATCCTTTACGGAAAAGGCTT
CAACCGCGAAGGTGAGCTTATCGATTTAGGTGTTAAGAATAAGCTAGTAGAGAAAGCGGGCGCTTGGTACAGCTACAAAG
GCAATAAGATCGGCCAAGGTAAATCGAACTCTTGTAAGCACCTACGTGAAAACCCAGAGATCGCTCTGGAACTTGACACT
AAGCTTCGTGAATTGCTACTGACTCCTGCTGTTCTTGAAGAGAAAGGCGCAGAGAAAGAAGAAGAAAACGAAGAGCTATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

89.97

95.087

0.855
  recA Vibrio cholerae O1 biovar El Tor strain E7946

89.97

95.087

0.855
  recA Pseudomonas stutzeri DSM 10701

75.529

95.665

0.723
  recA Acinetobacter baumannii D1279779

72.174

99.711

0.72
  recA Acinetobacter baylyi ADP1

71.387

100

0.714
  recA Neisseria gonorrhoeae MS11

66.667

100

0.671
  recA Neisseria gonorrhoeae MS11

66.667

100

0.671
  recA Neisseria gonorrhoeae strain FA1090

66.667

100

0.671
  recA Glaesserella parasuis strain SC1401

67.151

99.422

0.668
  recA Ralstonia pseudosolanacearum GMI1000

70.794

91.04

0.645
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.636

92.197

0.587
  recA Streptococcus mutans UA159

57.88

100

0.584
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

92.775

0.581
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.819

95.665

0.572
  recA Streptococcus pneumoniae Rx1

60.991

93.353

0.569
  recA Streptococcus pneumoniae R6

60.991

93.353

0.569
  recA Streptococcus pneumoniae D39

60.991

93.353

0.569
  recA Streptococcus pneumoniae TIGR4

60.991

93.353

0.569
  recA Helicobacter pylori strain NCTC11637

60.615

93.931

0.569
  recA Helicobacter pylori 26695

60.308

93.931

0.566
  recA Streptococcus mitis NCTC 12261

60.681

93.353

0.566
  recA Streptococcus mitis SK321

60.372

93.353

0.564
  recA Latilactobacillus sakei subsp. sakei 23K

57.353

98.266

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.436

92.775

0.561
  recA Streptococcus pyogenes NZ131

59.077

93.931

0.555
  recA Lactococcus lactis subsp. cremoris KW2

57.895

93.353

0.54