Detailed information NTG0635710

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: LTQ54_RS11260
• Genome accession: NZ_CP089203
• Coordinates: 2428431..2429411 (+)
• Length: 326 a.a.
• NCBI ID: WP_004735404.1
• Uniprot ID: A0A7W4C9S7
• Organism: Vibrio splendidus strain 2_C04b
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2423431..2434411

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LTQ54_RS11230 (LTQ54_11230)	ispD	2423684..2424385 (+)	702	WP_017108693.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
LTQ54_RS11235 (LTQ54_11235)	ispF	2424388..2424867 (+)	480	WP_004735397.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
LTQ54_RS11240 (LTQ54_11240)	truD	2424890..2425936 (+)	1047	WP_243578776.1	tRNA pseudouridine(13) synthase TruD	-
LTQ54_RS11245 (LTQ54_11245)	surE	2426013..2426756 (+)	744	WP_243578777.1	5'/3'-nucleotidase SurE	-
LTQ54_RS11250 (LTQ54_11250)	-	2426757..2427383 (+)	627	WP_004735402.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
LTQ54_RS11255 (LTQ54_11255)	nlpD	2427418..2428332 (+)	915	WP_029406471.1	murein hydrolase activator NlpD	-
LTQ54_RS11260 (LTQ54_11260)	rpoS	2428431..2429411 (+)	981	WP_004735404.1	RNA polymerase sigma factor RpoS	Regulator
LTQ54_RS11265 (LTQ54_11265)	mutS	2429569..2432130 (-)	2562	WP_243578778.1	DNA mismatch repair protein MutS	-
LTQ54_RS11270 (LTQ54_11270)	pncC	2432255..2432749 (+)	495	WP_243578779.1	nicotinamide-nucleotide amidase	-
LTQ54_RS11275 (LTQ54_11275)	recA	2432889..2433929 (+)	1041	WP_243578780.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 326 a.a.
• Molecular weight: 37244.51 Da
• Isoelectric Point: 5.4366

>NTDB_id=635710 LTQ54_RS11260 WP_004735404.1 2428431..2429411(+) (rpoS) [Vibrio splendidus strain 2_C04b]
MSISNAVTKEEFDLNQATTEPEALGKAKRTVKKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide

• Length: 981 bp

>NTDB_id=635710 LTQ54_RS11260 WP_004735404.1 2428431..2429411(+) (rpoS) [Vibrio splendidus strain 2_C04b]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTAACCAAGCAACCACGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCAAAAAGAAAACCGAAGCGAAAGAAGAAGTTGAAGTTACGTCTAAAAGTTTAGATGCTACTCAGCTTT
ATCTAGGCGAAATCGGTTTCTCACCACTACTAACCGCTGAAGAAGAAGTGCTTTATGCACGACGAGCTCTACGCGGTGAT
GAAGCAGCACGTAAACGCATGATCGAAAGTAACCTGCGTTTAGTGGTAAAAATTTCACGTCGTTATAGTAACCGTGGTCT
TGCACTTCTTGATCTTATTGAAGAAGGCAACCTAGGTTTGATTCGCGCCGTAGAGAAATTTGACCCAGAACGTGGTTTCC
GCTTCTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCGTTAATGAATCAGACTCGCACTATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTATCTGCGTACCGCAAGAGAGCTATCACAAAAGCTTGACCATGAACCAAC
GGCAGAAGAAATTGCTTCTAAGCTAGATAAGCCTGTTGGTGATGTGAGCAAGATGCTTCGTCTAAACGAAAGAGTGAGCT
CTGTTGATACGCCAATTGGTGGTGATGGTGAGAAAGCACTGTTGGATATTATTCCAGACATCAACAATTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCGTTGATTTTCTGGCTTGATGAACTGAATCCTAAGCAGAAAGAGGTGCT
TGCACGTCGCTTTGGACTACTGGGTTACGAACCGTCAACACTAGAAGAAGTAGGCCGTGAAATTAGCCTGACTCGCGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGCCGTCTACGTGAGATTCTTATCAAGCAAGGTCTGAATATGGAAAATCTG
TTCAACGTAGAAAACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (167-240)

• Sigma-70 region 2 (Sigma70_r2) (87-156)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (49-82)

• Sigma-70, region 4 (Sigma70_r4) (255-308)

3D structure

• AlphaFold DB: A0A7W4C9S7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.416	100	0.847