Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LPC09_RS10065 Genome accession   NZ_CP088245
Coordinates   2009707..2010747 (+) Length   346 a.a.
NCBI ID   WP_098796364.1    Uniprot ID   -
Organism   Metabacillus sp. B2-18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2004707..2015747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC09_RS10040 (LPC09_10040) - 2005353..2005610 (+) 258 WP_098796360.1 DUF3243 domain-containing protein -
  LPC09_RS10045 (LPC09_10045) - 2005763..2006554 (+) 792 WP_098796361.1 DUF3388 domain-containing protein -
  LPC09_RS10050 (LPC09_10050) - 2006562..2007443 (+) 882 WP_098796377.1 helix-turn-helix domain-containing protein -
  LPC09_RS10055 (LPC09_10055) pgsA 2007564..2008142 (+) 579 WP_098796362.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LPC09_RS10060 (LPC09_10060) cinA 2008155..2009405 (+) 1251 WP_098796363.1 competence/damage-inducible protein A Machinery gene
  LPC09_RS10065 (LPC09_10065) recA 2009707..2010747 (+) 1041 WP_098796364.1 recombinase RecA Machinery gene
  LPC09_RS10070 (LPC09_10070) rny 2011237..2012802 (+) 1566 WP_098796365.1 ribonuclease Y -
  LPC09_RS10075 (LPC09_10075) - 2012933..2013727 (+) 795 WP_098796366.1 TIGR00282 family metallophosphoesterase -
  LPC09_RS10080 (LPC09_10080) spoVS 2014038..2014298 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  LPC09_RS10085 (LPC09_10085) - 2014440..2015363 (+) 924 WP_098796367.1 dipeptidase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37648.85 Da        Isoelectric Point: 4.9077

>NTDB_id=633468 LPC09_RS10065 WP_098796364.1 2009707..2010747(+) (recA) [Metabacillus sp. B2-18]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDRKVSTVSSGSLALDTALGIGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILIIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT
KIKVVKNKVAPPFKVAEVDIMYGEGISKEGEIIDMGSDLDIVQKSGSWYSYNEERLGQGRENAKQFLKENPEIRLEIQGQ
IRKHYGLDEEVTVPDESQEELNLLGE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=633468 LPC09_RS10065 WP_098796364.1 2009707..2010747(+) (recA) [Metabacillus sp. B2-18]
GTGAGTGATCGTCAAGCTGCCTTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGATCTATTATGAAATT
AGGAGAGCAAACTGATCGAAAGGTATCAACTGTTTCAAGTGGTTCATTAGCACTTGATACTGCGTTAGGTATAGGTGGGT
ATCCTCGTGGTAGAATCATAGAAATCTATGGTCCTGAAAGCTCTGGTAAAACAACTGTAGCACTACATGCCATCGCTGAG
GTTCAACAGCAAGGTGGTCAAGCAGCATTTATTGATGCTGAACACGCACTTGACCCTGTATATGCACAAAAACTTGGTGT
AAACATCGATGAATTACTACTTTCACAACCTGATACAGGTGAACAAGCACTAGAAATTGCTGAAGCTCTTGTACGAAGTG
GTGCAGTTGATATTTTAATTATTGACTCAGTTGCAGCGTTAGTACCTAAAGCTGAAATTGAAGGTGAGATGGGTGATTCA
CATGTTGGTCTTCAAGCAAGACTGATGTCTCAAGCATTACGTAAATTATCAGGTGCTATAAATAAATCTAAAACAATTGC
TATTTTCATTAACCAAATTCGTGAAAAAGTAGGCGTGATGTTCGGAAACCCTGAGACAACTCCTGGTGGTCGTGCTTTAA
AATTCTATTCTTCTGTTCGTTTAGAAGTTCGCCGTGCTGAAACACTTAAACAAGGTAATGATATGGTCGGAAATAAAACA
AAAATTAAAGTAGTTAAAAATAAGGTGGCACCTCCTTTCAAAGTAGCAGAAGTTGATATTATGTACGGTGAGGGAATTTC
AAAAGAAGGCGAAATCATCGATATGGGTTCGGATTTGGATATTGTTCAAAAGAGCGGTTCTTGGTATTCATATAATGAAG
AACGTTTAGGTCAAGGTCGAGAAAATGCCAAACAATTCCTAAAGGAAAACCCTGAAATACGTTTAGAAATACAGGGTCAA
ATTCGAAAACATTATGGTCTAGACGAAGAAGTTACTGTACCAGATGAAAGTCAAGAAGAGCTTAACTTATTAGGGGAATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

92.073

94.798

0.873
  recA Latilactobacillus sakei subsp. sakei 23K

74.419

99.422

0.74
  recA Streptococcus mitis SK321

67.135

100

0.691
  recA Streptococcus pneumoniae TIGR4

70

98.266

0.688
  recA Streptococcus pneumoniae D39

70

98.266

0.688
  recA Streptococcus pneumoniae R6

70

98.266

0.688
  recA Streptococcus pneumoniae Rx1

70

98.266

0.688
  recA Streptococcus mitis NCTC 12261

70.909

95.376

0.676
  recA Streptococcus mutans UA159

70.181

95.954

0.673
  recA Streptococcus pyogenes NZ131

69.817

94.798

0.662
  recA Lactococcus lactis subsp. cremoris KW2

67.56

97.11

0.656
  recA Neisseria gonorrhoeae strain FA1090

64.653

95.665

0.619
  recA Neisseria gonorrhoeae MS11

64.653

95.665

0.619
  recA Neisseria gonorrhoeae MS11

64.653

95.665

0.619
  recA Ralstonia pseudosolanacearum GMI1000

65.244

94.798

0.618
  recA Helicobacter pylori strain NCTC11637

62.463

98.555

0.616
  recA Helicobacter pylori 26695

62.463

98.555

0.616
  recA Acinetobacter baumannii D1279779

61.047

99.422

0.607
  recA Vibrio cholerae strain A1552

65.421

92.775

0.607
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.421

92.775

0.607
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.947

97.977

0.607
  recA Acinetobacter baylyi ADP1

60.465

99.422

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.19

94.22

0.595
  recA Pseudomonas stutzeri DSM 10701

64.062

92.486

0.592
  recA Glaesserella parasuis strain SC1401

63.95

92.197

0.59
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.187

92.486

0.575