Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LPC09_RS10060 Genome accession   NZ_CP088245
Coordinates   2008155..2009405 (+) Length   416 a.a.
NCBI ID   WP_098796363.1    Uniprot ID   -
Organism   Metabacillus sp. B2-18     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2003155..2014405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPC09_RS10035 (LPC09_10035) - 2004565..2005281 (+) 717 WP_098796359.1 SDR family oxidoreductase -
  LPC09_RS10040 (LPC09_10040) - 2005353..2005610 (+) 258 WP_098796360.1 DUF3243 domain-containing protein -
  LPC09_RS10045 (LPC09_10045) - 2005763..2006554 (+) 792 WP_098796361.1 DUF3388 domain-containing protein -
  LPC09_RS10050 (LPC09_10050) - 2006562..2007443 (+) 882 WP_098796377.1 helix-turn-helix domain-containing protein -
  LPC09_RS10055 (LPC09_10055) pgsA 2007564..2008142 (+) 579 WP_098796362.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LPC09_RS10060 (LPC09_10060) cinA 2008155..2009405 (+) 1251 WP_098796363.1 competence/damage-inducible protein A Machinery gene
  LPC09_RS10065 (LPC09_10065) recA 2009707..2010747 (+) 1041 WP_098796364.1 recombinase RecA Machinery gene
  LPC09_RS10070 (LPC09_10070) rny 2011237..2012802 (+) 1566 WP_098796365.1 ribonuclease Y -
  LPC09_RS10075 (LPC09_10075) - 2012933..2013727 (+) 795 WP_098796366.1 TIGR00282 family metallophosphoesterase -
  LPC09_RS10080 (LPC09_10080) spoVS 2014038..2014298 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 46223.66 Da        Isoelectric Point: 5.1292

>NTDB_id=633467 LPC09_RS10060 WP_098796363.1 2008155..2009405(+) (cinA) [Metabacillus sp. B2-18]
MNIRTEIIAVGSELLLGQIVNSNAQFLSQELAELGLSVYYHTVVGDNPSRLESAINNAKERSNVIIFTGGLGPTKDDLTK
ETISKVLGRELTFDVEALESIERYFTQTKRSMSENNKKQALVIDGSYILKNDYGMAPGMAVDIDGMIYMLLPGPPSEMKP
MFENYGREYFQTKLGFQDKIISRVLRYFGIGESQLETDIQDIIDGQTNPTIAPLAADGEVTLRLTAKHKDEHIAQKLLDE
TEKRINDRVGEFFYGYEQTTLVHELNKLLMEKGKTISAAESLTGGMFSEYITSLDGASQIFKGSIVSYTNEVKEQILKVQ
KRTLEQFGAVSEECAREMAEQIRKLSKSDIGISFTGAAGPQPHEGQPVGTVFIAISMGDQNSNVFKLNLAGSRKGIRVRS
VKYGCHYLVKLLNEIE

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=633467 LPC09_RS10060 WP_098796363.1 2008155..2009405(+) (cinA) [Metabacillus sp. B2-18]
ATGAACATAAGAACAGAGATTATCGCCGTTGGTTCGGAGTTGCTTTTAGGTCAAATAGTGAACAGTAATGCCCAATTTTT
ATCACAAGAGTTAGCTGAACTTGGCTTGAGTGTTTATTATCATACCGTAGTTGGAGATAACCCTTCACGTCTAGAATCAG
CGATTAACAACGCAAAAGAACGTTCTAATGTTATCATTTTTACTGGAGGCCTCGGTCCGACTAAGGATGATTTAACAAAA
GAAACAATTTCAAAAGTGTTGGGAAGAGAGCTTACGTTTGATGTGGAAGCTTTAGAAAGTATCGAACGTTATTTTACTCA
AACAAAACGTAGCATGTCTGAAAATAATAAAAAACAAGCATTGGTTATTGATGGCTCCTACATTTTAAAAAATGACTATG
GTATGGCTCCTGGAATGGCTGTTGATATTGACGGAATGATTTATATGCTTTTGCCAGGCCCGCCTAGTGAAATGAAGCCA
ATGTTTGAGAATTATGGAAGAGAATATTTCCAAACAAAACTAGGTTTTCAAGATAAAATTATTTCACGTGTTTTAAGATA
TTTTGGAATTGGTGAATCCCAGCTTGAAACAGATATACAGGATATAATTGATGGACAAACAAATCCGACAATTGCTCCTC
TGGCAGCGGATGGAGAAGTAACATTAAGACTTACAGCTAAGCATAAAGATGAACATATTGCACAAAAACTCCTTGATGAG
ACAGAGAAAAGAATTAATGACCGTGTAGGTGAGTTTTTCTATGGTTATGAACAGACAACCCTTGTTCATGAATTAAATAA
ACTATTGATGGAAAAAGGGAAAACAATTTCTGCAGCTGAAAGTTTAACAGGTGGAATGTTTTCAGAGTACATAACATCTT
TAGATGGTGCTTCCCAAATTTTTAAAGGTAGTATTGTTTCTTATACAAATGAAGTGAAAGAGCAAATTTTGAAGGTGCAA
AAACGTACCCTTGAACAATTTGGCGCAGTTAGCGAGGAATGTGCAAGGGAAATGGCTGAGCAAATCCGAAAGCTCTCTAA
AAGTGATATAGGCATTAGCTTTACAGGTGCTGCAGGACCACAACCACATGAGGGACAACCTGTAGGGACAGTTTTTATTG
CTATTTCTATGGGCGATCAGAATTCCAATGTTTTTAAACTGAATCTAGCTGGATCTAGAAAGGGAATTCGTGTTCGCTCG
GTAAAGTATGGATGTCATTATTTAGTCAAACTATTAAACGAAATTGAATGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-411)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Probable molybdopterin binding domain (MoCF_biosynth)

(7-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

62.287

98.798

0.615
  cinA Streptococcus pneumoniae TIGR4

47.143

100

0.476
  cinA Streptococcus mitis SK321

46.667

100

0.471
  cinA Streptococcus mitis NCTC 12261

46.667

100

0.471
  cinA Streptococcus pneumoniae Rx1

46.429

100

0.469
  cinA Streptococcus pneumoniae R6

46.429

100

0.469
  cinA Streptococcus pneumoniae D39

46.19

100

0.466
  cinA Streptococcus mutans UA159

46.618

99.519

0.464
  cinA Streptococcus suis isolate S10

39.947

90.865

0.363