Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LQ052_RS13235 Genome accession   NZ_CP088203
Coordinates   2847418..2848458 (-) Length   346 a.a.
NCBI ID   WP_005875116.1    Uniprot ID   Q6KCJ7
Organism   Enterococcus durans strain S8-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2842418..2853458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ052_RS13225 (LQ052_13225) proC 2844656..2845459 (+) 804 WP_081135001.1 pyrroline-5-carboxylate reductase -
  LQ052_RS13230 (LQ052_13230) rny 2845494..2847050 (-) 1557 WP_005875117.1 ribonuclease Y -
  LQ052_RS13235 (LQ052_13235) recA 2847418..2848458 (-) 1041 WP_005875116.1 recombinase RecA Machinery gene
  LQ052_RS13240 (LQ052_13240) cinA 2848563..2849810 (-) 1248 WP_081134999.1 competence/damage-inducible protein A Machinery gene
  LQ052_RS13245 (LQ052_13245) pgsA 2850134..2850712 (-) 579 WP_005875113.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LQ052_RS13250 (LQ052_13250) - 2851610..2852905 (+) 1296 WP_095443582.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37255.55 Da        Isoelectric Point: 4.8293

>NTDB_id=633298 LQ052_RS13235 WP_005875116.1 2847418..2848458(-) (recA) [Enterococcus durans strain S8-3]
MADDRKAALEAALKKIEKNYGKGSIMKLGEKIDQQISTIPSGSLALDVALGVGGYPRGRIVEVYGPESSGKTTVALHAIA
EVQRNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGD
SHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNR
TKIKVVKNKVAPPFKIAEVDVMYGQGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGRENAKIYMANHPEMMAEVSA
LVRAAYGIGEEVEVPEEAQAELPLEE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=633298 LQ052_RS13235 WP_005875116.1 2847418..2848458(-) (recA) [Enterococcus durans strain S8-3]
TTGGCAGATGATCGTAAAGCAGCGTTAGAAGCTGCGTTGAAAAAAATTGAAAAGAACTATGGTAAGGGTTCGATCATGAA
GTTAGGCGAAAAGATCGACCAACAGATTTCTACCATCCCAAGTGGTTCACTTGCACTAGATGTTGCATTGGGAGTTGGTG
GCTATCCTCGAGGCCGAATCGTTGAAGTCTATGGACCAGAAAGTTCAGGTAAGACCACAGTTGCCTTACATGCAATTGCT
GAAGTACAAAGAAATGGTGGCACAGCAGCGTTTATTGATGCTGAACATGCCTTAGATCCACAATATGCCCAAAAATTAGG
CGTAAATATCGATGAATTACTTCTTTCTCAACCTGATACTGGTGAACAGGGATTAGAAATCGCTGATGCTTTAGTATCAA
GTGGTGCGGTTGACATCGTTGTTGTCGATTCTGTAGCAGCTTTGGTTCCTCGTGCAGAAATTGATGGCGAAATGGGTGAC
TCTCACGTAGGGTTACAAGCTCGTCTAATGTCTCAAGCATTACGTAAATTGTCAGGATCGATCAATAAAACAAAAACGAT
TGCGATCTTTATCAACCAGATCCGTGAAAAAGTCGGCGTGATGTTTGGTAATCCTGAAATCACACCAGGGGGACGTGCGT
TGAAATTCTACGCAACGATCCGTTTAGAAGTCCGTCGTGCGGAACAATTAAAACAAGGAACAGATATTGTTGGTAACCGT
ACAAAGATCAAAGTGGTGAAAAATAAAGTTGCGCCACCGTTCAAAATCGCTGAAGTGGATGTCATGTACGGTCAAGGTAT
TTCTCAAGAAGGAGAATTACTGGATATGGCTGTTGAAAAAGACATCGTTGATAAGAGCGGAGCTTGGTATTCTTATAAAG
AAGACCGTATCGGCCAAGGACGCGAAAATGCAAAGATCTATATGGCAAATCATCCAGAAATGATGGCAGAAGTTTCTGCA
TTGGTACGTGCGGCTTATGGTATCGGCGAAGAAGTCGAAGTACCAGAAGAAGCACAGGCAGAACTACCATTAGAAGAATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6KCJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

79.36

99.422

0.789
  recA Bacillus subtilis subsp. subtilis str. 168

78.769

93.931

0.74
  recA Streptococcus pneumoniae D39

70.746

96.821

0.685
  recA Streptococcus pneumoniae R6

70.746

96.821

0.685
  recA Streptococcus pneumoniae Rx1

70.746

96.821

0.685
  recA Streptococcus pneumoniae TIGR4

70.746

96.821

0.685
  recA Streptococcus mitis SK321

70.659

96.532

0.682
  recA Streptococcus mitis NCTC 12261

70.149

96.821

0.679
  recA Streptococcus mutans UA159

67.151

99.422

0.668
  recA Streptococcus pyogenes NZ131

68.882

95.665

0.659
  recA Lactococcus lactis subsp. cremoris KW2

66.866

96.821

0.647
  recA Neisseria gonorrhoeae strain FA1090

61.111

98.844

0.604
  recA Neisseria gonorrhoeae MS11

61.111

98.844

0.604
  recA Neisseria gonorrhoeae MS11

61.111

98.844

0.604
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

94.509

0.601
  recA Ralstonia pseudosolanacearum GMI1000

60.534

97.399

0.59
  recA Acinetobacter baumannii D1279779

58.333

100

0.587
  recA Vibrio cholerae strain A1552

62.539

93.353

0.584
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.539

93.353

0.584
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.064

98.844

0.584
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.538

93.931

0.578
  recA Helicobacter pylori 26695

57.514

100

0.575
  recA Helicobacter pylori strain NCTC11637

57.514

100

0.575
  recA Pseudomonas stutzeri DSM 10701

61.111

93.642

0.572
  recA Acinetobacter baylyi ADP1

61.3

93.353

0.572
  recA Glaesserella parasuis strain SC1401

61.059

92.775

0.566