Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LQ052_RS13240 Genome accession   NZ_CP088203
Coordinates   2848563..2849810 (-) Length   415 a.a.
NCBI ID   WP_081134999.1    Uniprot ID   -
Organism   Enterococcus durans strain S8-3     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 2843563..2854810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LQ052_RS13225 (LQ052_13225) proC 2844656..2845459 (+) 804 WP_081135001.1 pyrroline-5-carboxylate reductase -
  LQ052_RS13230 (LQ052_13230) rny 2845494..2847050 (-) 1557 WP_005875117.1 ribonuclease Y -
  LQ052_RS13235 (LQ052_13235) recA 2847418..2848458 (-) 1041 WP_005875116.1 recombinase RecA Machinery gene
  LQ052_RS13240 (LQ052_13240) cinA 2848563..2849810 (-) 1248 WP_081134999.1 competence/damage-inducible protein A Machinery gene
  LQ052_RS13245 (LQ052_13245) pgsA 2850134..2850712 (-) 579 WP_005875113.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LQ052_RS13250 (LQ052_13250) - 2851610..2852905 (+) 1296 WP_095443582.1 ISL3 family transposase -
  LQ052_RS13255 (LQ052_13255) - 2853125..2854012 (-) 888 WP_095443649.1 RodZ domain-containing protein -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45996.50 Da        Isoelectric Point: 4.8191

>NTDB_id=633299 LQ052_RS13240 WP_081134999.1 2848563..2849810(-) (cinA) [Enterococcus durans strain S8-3]
MKSEIIAVGTELLLGQVVNTNATFLSEQLADLGIDVYYQTVVGDNPTRLEELIQLAETRSELIILCGGLGPTEDDLTKEV
TAKHLGRELIQNTEGYKKLLTFFETTKRKMTENNLQQSQIIEGGIPLPNRTGLALGTFFQTEDHVYILLPGPPSELKPMF
IEQARPLLEEKFPSEEKLISKVLRFYGIGESRLVTELKDLIETQINPTIAPYAKPNEVTLRLTVKTKDAHAGNQALLALE
ERIQERVGEYFYGYGDDNSLPKVVVDLLKERNQTITAAESLTAGAFQAALGDIPGVSAVFPGGFTTYSLETKANFLTIDR
HFLEKYGTVSQECAEQMALQARKIAGTDYGISFTGVAGPDELEGQPVGTVWIALAYGDEAVISQKYRFTRDRAAIRNSAV
MQGFDLLRRQVLRKK

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=633299 LQ052_RS13240 WP_081134999.1 2848563..2849810(-) (cinA) [Enterococcus durans strain S8-3]
ATGAAATCAGAAATTATTGCCGTAGGAACAGAGCTTTTATTAGGGCAAGTTGTCAATACCAACGCGACATTTTTATCAGA
ACAATTAGCAGATCTTGGGATCGACGTCTATTATCAAACAGTTGTGGGAGATAATCCTACACGTTTAGAAGAGTTGATTC
AGTTAGCAGAAACGAGAAGTGAATTGATCATTTTGTGTGGTGGATTAGGACCGACAGAAGATGATCTAACAAAAGAAGTG
ACAGCAAAGCATCTTGGTAGAGAACTAATTCAAAATACAGAAGGATATAAAAAATTATTGACCTTTTTTGAAACAACGAA
ACGAAAGATGACAGAAAACAATTTGCAACAATCACAAATCATCGAAGGGGGAATCCCGCTACCCAATCGTACTGGTCTAG
CCTTGGGTACATTTTTCCAAACAGAAGATCATGTGTATATCTTACTACCGGGTCCGCCAAGTGAATTGAAACCAATGTTC
ATCGAACAAGCGCGTCCGCTATTGGAAGAAAAATTTCCATCAGAAGAAAAATTGATTTCAAAAGTGCTAAGGTTTTATGG
TATTGGAGAGTCACGTCTAGTAACAGAATTAAAAGATTTGATCGAAACACAGATCAATCCAACGATCGCACCTTATGCAA
AACCCAACGAGGTCACTTTGCGATTAACTGTGAAAACAAAGGATGCACATGCAGGAAATCAAGCATTACTAGCTTTAGAA
GAAAGAATCCAAGAACGAGTTGGCGAGTATTTTTATGGCTACGGGGATGACAATTCTCTGCCAAAAGTTGTCGTGGATCT
CTTAAAAGAAAGGAACCAAACGATCACTGCGGCGGAAAGTTTGACCGCAGGAGCTTTTCAAGCTGCATTAGGAGATATCC
CAGGTGTATCTGCAGTCTTTCCTGGTGGTTTTACGACGTATTCGTTAGAAACAAAAGCAAATTTTTTAACGATTGATCGC
CACTTTTTAGAAAAATATGGGACAGTTAGTCAAGAATGTGCGGAGCAAATGGCTCTTCAAGCAAGAAAAATAGCAGGAAC
AGATTACGGGATTTCTTTCACTGGAGTAGCTGGACCAGATGAACTCGAAGGACAGCCTGTTGGGACGGTTTGGATTGCGT
TAGCATATGGAGACGAAGCAGTCATTTCACAGAAATATCGATTCACGAGAGACCGCGCAGCGATAAGAAACAGCGCAGTA
ATGCAAGGATTTGATCTGTTAAGAAGACAAGTATTAAGAAAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

52.871

100

0.533
  cinA Streptococcus pneumoniae TIGR4

52.619

100

0.533
  cinA Streptococcus pneumoniae Rx1

52.381

100

0.53
  cinA Streptococcus pneumoniae R6

52.381

100

0.53
  cinA Streptococcus mitis SK321

52.381

100

0.53
  cinA Streptococcus pneumoniae D39

52.381

100

0.53
  cinA Streptococcus mitis NCTC 12261

51.905

100

0.525
  cinA Bacillus subtilis subsp. subtilis str. 168

49.517

99.759

0.494
  cinA Streptococcus suis isolate S10

43.705

100

0.443