Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KO561_RS09265 Genome accession   NZ_CP088020
Coordinates   1781399..1782445 (+) Length   348 a.a.
NCBI ID   WP_269140706.1    Uniprot ID   -
Organism   Radiobacillus kanasensis strain 80     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1776399..1787445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KO561_RS09240 (KO561_09240) - 1777114..1777374 (+) 261 WP_231096814.1 DUF3243 domain-containing protein -
  KO561_RS09245 (KO561_09245) - 1777596..1778387 (+) 792 WP_231096815.1 DUF3388 domain-containing protein -
  KO561_RS09250 (KO561_09250) - 1778405..1779322 (+) 918 WP_231096816.1 RodZ domain-containing protein -
  KO561_RS09255 (KO561_09255) pgsA 1779400..1779978 (+) 579 WP_231096817.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KO561_RS09260 (KO561_09260) cinA 1779975..1781219 (+) 1245 WP_331000851.1 competence/damage-inducible protein A Machinery gene
  KO561_RS09265 (KO561_09265) recA 1781399..1782445 (+) 1047 WP_269140706.1 recombinase RecA Machinery gene
  KO561_RS09270 (KO561_09270) rny 1782747..1784303 (+) 1557 WP_231096818.1 ribonuclease Y -
  KO561_RS09275 (KO561_09275) - 1784426..1785223 (+) 798 WP_231096819.1 TIGR00282 family metallophosphoesterase -
  KO561_RS09280 (KO561_09280) spoVS 1785330..1785590 (+) 261 WP_044157499.1 stage V sporulation protein SpoVS -
  KO561_RS09285 (KO561_09285) miaB 1785828..1787408 (+) 1581 WP_231096820.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37983.12 Da        Isoelectric Point: 4.9251

>NTDB_id=632499 KO561_RS09265 WP_269140706.1 1781399..1782445(+) (recA) [Radiobacillus kanasensis strain 80]
MSDRKQALDMALKQIEKQFGKGSIMKLGERGEQKVATVPSGSLALDVALGVGGYPRGRVIEIYGPESSGKTTVSLHAIAE
AQRQGGQAAFIDAEHALDPVYARKLGVNVDELLLSQPDTGEQALEIAEALVRSGAVDMIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDFVGNKT
RIKVVKNKVAPPFRTAEVDIMYGEGISRQGELLDIGSDLDIVLKSGAWYSYNEERLGQGRENAKQFLKENEDIAMEIYQA
IRDHYEMDTLAPEATEESKEGQEVLDFE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=632499 KO561_RS09265 WP_269140706.1 1781399..1782445(+) (recA) [Radiobacillus kanasensis strain 80]
TTGAGCGATCGTAAACAAGCCTTAGATATGGCGTTAAAACAAATAGAAAAGCAGTTCGGAAAAGGTTCTATCATGAAATT
AGGAGAACGAGGAGAGCAAAAAGTCGCAACCGTTCCGAGTGGTTCATTGGCATTGGATGTTGCACTTGGAGTTGGAGGGT
ACCCTAGAGGTCGTGTTATTGAAATTTACGGTCCAGAGTCCTCTGGTAAAACAACGGTTTCGTTACATGCGATTGCGGAA
GCTCAACGTCAAGGTGGACAGGCTGCATTTATTGATGCGGAGCATGCTTTAGATCCTGTCTACGCTAGAAAATTAGGAGT
TAATGTAGATGAACTTCTTCTTTCACAACCGGATACAGGAGAACAAGCTCTTGAAATCGCAGAAGCACTAGTTCGAAGTG
GTGCAGTAGACATGATTGTTATTGACTCTGTTGCTGCGTTAGTACCAAAGGCAGAGATTGAAGGGGAGATGGGAGATTCT
CACGTAGGTCTGCAAGCTCGTCTTATGTCTCAAGCATTACGAAAGCTTTCTGGTGCAATTAACAAGTCGAAAACAACTGC
AATCTTTATCAACCAAATCCGTGAAAAGGTTGGTGTCATGTTCGGAAATCCTGAAACGACACCTGGTGGGCGTGCTCTTA
AATTCTACTCATCTGTGCGTTTAGAAGTACGTCGTGCAGAAACGCTAAAGCAAGGAAATGATTTTGTCGGTAACAAAACG
AGAATCAAAGTGGTTAAAAATAAAGTTGCTCCACCTTTCCGCACCGCTGAAGTAGATATTATGTATGGGGAAGGTATTTC
AAGACAAGGGGAGCTTCTCGATATTGGTTCGGACTTGGATATCGTTTTAAAAAGTGGTGCTTGGTATTCCTATAATGAAG
AACGACTTGGCCAAGGAAGAGAAAATGCGAAGCAGTTCTTAAAAGAAAACGAAGATATCGCTATGGAGATTTATCAAGCC
ATTCGTGATCATTACGAAATGGATACACTAGCACCAGAAGCTACAGAAGAAAGCAAGGAAGGGCAAGAAGTATTAGATTT
TGAGTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.106

94.54

0.805
  recA Latilactobacillus sakei subsp. sakei 23K

71.053

98.276

0.698
  recA Streptococcus mutans UA159

67.536

99.138

0.67
  recA Streptococcus pneumoniae TIGR4

70.122

94.253

0.661
  recA Streptococcus mitis NCTC 12261

70.122

94.253

0.661
  recA Streptococcus pneumoniae Rx1

70.122

94.253

0.661
  recA Streptococcus pneumoniae D39

70.122

94.253

0.661
  recA Streptococcus pneumoniae R6

70.122

94.253

0.661
  recA Streptococcus mitis SK321

69.817

94.253

0.658
  recA Streptococcus pyogenes NZ131

69.419

93.966

0.652
  recA Ralstonia pseudosolanacearum GMI1000

63.352

100

0.641
  recA Lactococcus lactis subsp. cremoris KW2

68

93.391

0.635
  recA Neisseria gonorrhoeae strain FA1090

64.223

97.989

0.629
  recA Neisseria gonorrhoeae MS11

64.223

97.989

0.629
  recA Neisseria gonorrhoeae MS11

64.223

97.989

0.629
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.573

98.276

0.615
  recA Vibrio cholerae strain A1552

65.421

92.241

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.421

92.241

0.603
  recA Acinetobacter baylyi ADP1

60.345

100

0.603
  recA Pseudomonas stutzeri DSM 10701

62.763

95.69

0.601
  recA Glaesserella parasuis strain SC1401

65.312

91.954

0.601
  recA Helicobacter pylori strain NCTC11637

60.588

97.701

0.592
  recA Helicobacter pylori 26695

60.588

97.701

0.592
  recA Acinetobacter baumannii D1279779

63.043

92.529

0.583
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.212

94.828

0.58
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.61

92.816

0.572