Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   KO561_RS09260 Genome accession   NZ_CP088020
Coordinates   1779975..1781219 (+) Length   414 a.a.
NCBI ID   WP_331000851.1    Uniprot ID   -
Organism   Radiobacillus kanasensis strain 80     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1774975..1786219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KO561_RS09230 (KO561_09230) yfmH 1775006..1776295 (+) 1290 WP_231096812.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  KO561_RS09235 (KO561_09235) ymfI 1776300..1777013 (+) 714 WP_231096813.1 elongation factor P 5-aminopentanone reductase -
  KO561_RS09240 (KO561_09240) - 1777114..1777374 (+) 261 WP_231096814.1 DUF3243 domain-containing protein -
  KO561_RS09245 (KO561_09245) - 1777596..1778387 (+) 792 WP_231096815.1 DUF3388 domain-containing protein -
  KO561_RS09250 (KO561_09250) - 1778405..1779322 (+) 918 WP_231096816.1 RodZ domain-containing protein -
  KO561_RS09255 (KO561_09255) pgsA 1779400..1779978 (+) 579 WP_231096817.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KO561_RS09260 (KO561_09260) cinA 1779975..1781219 (+) 1245 WP_331000851.1 competence/damage-inducible protein A Machinery gene
  KO561_RS09265 (KO561_09265) recA 1781399..1782445 (+) 1047 WP_269140706.1 recombinase RecA Machinery gene
  KO561_RS09270 (KO561_09270) rny 1782747..1784303 (+) 1557 WP_231096818.1 ribonuclease Y -
  KO561_RS09275 (KO561_09275) - 1784426..1785223 (+) 798 WP_231096819.1 TIGR00282 family metallophosphoesterase -
  KO561_RS09280 (KO561_09280) spoVS 1785330..1785590 (+) 261 WP_044157499.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45406.21 Da        Isoelectric Point: 4.7610

>NTDB_id=632498 KO561_RS09260 WP_331000851.1 1779975..1781219(+) (cinA) [Radiobacillus kanasensis strain 80]
MSVKAEIIAVGTELLLGQISNTNAQWLSEQLAKRGVYVYHHSVVGDNLDRVKETFEQAGKRADIVIVTGGLGPTDDDLTR
EAFQALSGYGLIEDKETMKKIESYFEKANRVMTPNNRKQARVFENSTVFQNSAGMAPGIVVEYQDTVWIFMPGVPREMKA
ISTEQAFPYLEEHFQLRSIIRSKMLRFIGIGESQLEHDLYDLIQNQTNPTIAPLASEGEVGLRLTAQSESEQEAEELIVS
TESLIREKVGAYMYGTDDQTLEQSVKELLNQQGKTLAAAESLTGGMFASTLVSVEGASSVFKGGVVSYASSVKSGLLQVS
EQTIVEHGTVSDQTAKEMARNVRELTGAEIGISFTGIAGPDAVEGKPVGTVVIGIDQNKEDSVTKTYQFTGDRSSIRRRT
VKKGYELLFHLLTN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=632498 KO561_RS09260 WP_331000851.1 1779975..1781219(+) (cinA) [Radiobacillus kanasensis strain 80]
ATGAGTGTGAAAGCAGAAATAATTGCAGTAGGTACGGAACTCCTATTAGGACAAATTTCCAATACGAATGCGCAATGGTT
GTCCGAACAGCTCGCGAAACGTGGCGTGTATGTGTATCATCATAGTGTCGTGGGCGACAATTTAGACCGTGTAAAAGAAA
CGTTTGAACAAGCTGGTAAACGTGCTGATATAGTGATTGTAACTGGTGGACTAGGTCCAACCGATGATGACTTAACGAGA
GAAGCGTTTCAAGCTTTATCTGGTTACGGATTAATAGAAGATAAGGAAACAATGAAAAAGATTGAATCCTATTTTGAAAA
AGCGAACAGAGTGATGACCCCGAACAACAGAAAGCAAGCACGAGTGTTTGAAAATAGTACCGTTTTTCAAAATAGTGCTG
GCATGGCTCCAGGAATTGTAGTGGAGTATCAGGATACCGTATGGATTTTTATGCCGGGGGTCCCTAGAGAAATGAAAGCT
ATTTCTACGGAACAGGCTTTTCCATATCTAGAAGAGCATTTTCAATTAAGGTCGATTATTCGCTCTAAAATGTTACGATT
TATCGGCATTGGAGAATCTCAGCTAGAGCATGATCTTTATGATTTGATACAGAATCAAACGAATCCAACAATCGCTCCAT
TAGCCTCCGAAGGGGAGGTAGGTCTGAGGCTGACTGCACAATCTGAATCAGAGCAAGAGGCGGAAGAGCTCATTGTTTCT
ACTGAATCCTTGATTCGAGAAAAAGTAGGCGCTTATATGTATGGAACGGATGATCAAACACTAGAACAATCTGTCAAAGA
ACTACTAAATCAACAAGGCAAGACGTTAGCAGCGGCGGAAAGCTTAACTGGTGGTATGTTTGCGAGCACGTTGGTATCAG
TAGAAGGGGCTTCCTCTGTCTTTAAAGGCGGGGTGGTAAGCTACGCTTCGTCCGTTAAAAGTGGTCTCCTACAAGTATCT
GAACAAACGATTGTGGAACACGGAACCGTCAGTGATCAAACAGCGAAAGAAATGGCTAGAAATGTTCGAGAGTTAACCGG
TGCAGAGATTGGCATCAGTTTTACTGGCATAGCAGGCCCGGATGCAGTGGAAGGTAAGCCAGTTGGAACCGTTGTGATAG
GTATCGATCAGAACAAAGAAGATTCGGTAACGAAGACTTATCAATTTACTGGAGATCGCTCGTCCATTCGGAGAAGAACG
GTGAAAAAAGGATATGAACTCCTTTTCCATTTGCTTACTAACTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Probable molybdopterin binding domain (MoCF_biosynth)

(7-171)

Competence-damaged protein (CinA)

(259-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

48.9

98.792

0.483
  cinA Streptococcus mitis SK321

42.788

100

0.43
  cinA Streptococcus pneumoniae TIGR4

42.651

100

0.428
  cinA Streptococcus pneumoniae R6

42.169

100

0.423
  cinA Streptococcus pneumoniae Rx1

42.169

100

0.423
  cinA Streptococcus pneumoniae D39

41.928

100

0.42
  cinA Streptococcus mitis NCTC 12261

41.827

100

0.42
  cinA Streptococcus mutans UA159

39.512

99.034

0.391