Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N596_RS06695 Genome accession   NC_022584
Coordinates   1443307..1444449 (-) Length   380 a.a.
NCBI ID   WP_023027382.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1438307..1449449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N596_RS06660 (N596_06845) - 1438752..1439999 (-) 1248 WP_023027378.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  N596_RS06665 (N596_06850) - 1440326..1440637 (-) 312 WP_006595405.1 DUF1292 domain-containing protein -
  N596_RS06670 (N596_06855) ruvX 1440655..1441074 (-) 420 WP_023027379.1 Holliday junction resolvase RuvX -
  N596_RS06675 (N596_06860) - 1441074..1441340 (-) 267 WP_006597020.1 IreB family regulatory phosphoprotein -
  N596_RS06680 (N596_06865) - 1441483..1442034 (-) 552 WP_023027380.1 SP0191 family lipoprotein -
  N596_RS06685 (N596_06870) - 1442044..1442637 (-) 594 WP_023027381.1 SP0191 family lipoprotein -
  N596_RS06690 (N596_06875) spx 1442821..1443219 (-) 399 WP_006595399.1 transcriptional regulator Spx -
  N596_RS06695 (N596_06880) recA 1443307..1444449 (-) 1143 WP_023027382.1 recombinase RecA Machinery gene
  N596_RS06700 (N596_06885) cinA 1444497..1445765 (-) 1269 WP_023027383.1 competence/damage-inducible protein A Machinery gene
  N596_RS06705 (N596_06890) - 1445849..1446415 (-) 567 WP_023027384.1 DNA-3-methyladenine glycosylase I -
  N596_RS06710 (N596_06895) ruvA 1446425..1447018 (-) 594 WP_023027385.1 Holliday junction branch migration protein RuvA -
  N596_RS06715 (N596_06900) mutL 1447039..1448988 (-) 1950 WP_023027386.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40962.64 Da        Isoelectric Point: 4.7230

>NTDB_id=62960 N596_RS06695 WP_023027382.1 1443307..1444449(-) (recA) [Streptococcus ilei]
MAKKQKKLDDISKKFGDEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTGELLKIATDLDLIQKAGAWYSYNGEKIGQGSE
NAKKYLADHPEIFDEIDHQVRVRFGLIDDDTAVVVQDEVAESPLLEEVTLDLDDAIEIEE

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=62960 N596_RS06695 WP_023027382.1 1443307..1444449(-) (recA) [Streptococcus ilei]
ATGGCGAAAAAACAGAAAAAATTAGATGATATCTCTAAGAAATTCGGAGACGAGCGTGAAAAAGCGCTCAATGATGCCCT
AAAGTTGATCGAAAAAGACTTTGGTAAAGGATCCATCATGCGTCTGGGCGAACGCGCAGAGCAAAAAGTTCAAGTCATGA
GCTCAGGTTCCTTGGCTCTTGATATTGCCTTGGGTGCTGGTGGTTATCCAAAAGGTCGGATCATCGAAATCTATGGTCCA
GAATCATCTGGTAAAACAACCGTTGCCCTCCATGCAGTAGCGCAAGCACAGAAAGAAGGAGGCATTGCTGCCTTTATCGA
TGCCGAGCATGCCTTGGACCCATCTTATGCGGCAGCTCTTGGGGTTAATATTGATGAACTCCTCTTGTCTCAACCAGACT
CAGGGGAACAAGGACTTGAAATTGCTGGTAAATTGATCGACTCTGGTGCCGTTGACTTGGTCGTTATCGACTCTGTTGCT
GCCTTGGTCCCACGCGCAGAAATCGATGGAGATATCGGTGACAGCCACGTTGGTTTGCAAGCGCGGATGATGAGCCAGGC
TATGCGTAAGCTTGGAGCTTCAATCAACAAGACCAAGACCATTGCTATCTTTATCAACCAATTGCGTGAAAAAGTTGGGG
TCATGTTTGGGAATCCAGAAACCACACCTGGTGGTCGTGCCCTGAAATTCTACGCTTCTGTTCGTCTAGATGTTCGTGGA
AATACTCAAATCAAGGGTACTGGGGACCAAAAAGATACCAACGTTGGTAAGGAAACCAAGATCAAGGTTGTGAAGAACAA
GGTGGCTCCACCGTTCAAAGAAGCCATGGTTGAAATCATGTACGGAGAAGGAATTTCACGTACAGGCGAATTGCTAAAAA
TTGCAACAGACCTTGATTTGATCCAAAAAGCAGGGGCTTGGTATTCTTATAACGGTGAGAAGATTGGCCAAGGTTCTGAA
AATGCTAAGAAGTACTTGGCAGACCATCCAGAAATTTTTGATGAGATTGATCACCAAGTGCGCGTGCGCTTCGGTTTGAT
CGATGATGACACTGCTGTAGTTGTACAAGATGAAGTAGCTGAAAGCCCACTTCTTGAAGAAGTAACACTAGATCTTGATG
ATGCCATTGAGATTGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

91.076

100

0.913
  recA Streptococcus mitis SK321

90.814

100

0.911
  recA Streptococcus pneumoniae Rx1

88.831

100

0.9
  recA Streptococcus pneumoniae D39

88.831

100

0.9
  recA Streptococcus pneumoniae R6

88.831

100

0.9
  recA Streptococcus pneumoniae TIGR4

88.831

100

0.9
  recA Streptococcus mutans UA159

84.496

100

0.861
  recA Streptococcus pyogenes NZ131

85.526

100

0.855
  recA Lactococcus lactis subsp. cremoris KW2

79.31

91.579

0.726
  recA Latilactobacillus sakei subsp. sakei 23K

69.578

87.368

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

67.656

88.684

0.6
  recA Acinetobacter baumannii D1279779

59.143

92.105

0.545
  recA Glaesserella parasuis strain SC1401

60.882

89.474

0.545
  recA Acinetobacter baylyi ADP1

58.974

92.368

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.158

85

0.537
  recA Vibrio cholerae strain A1552

62.462

85.526

0.534
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.462

85.526

0.534
  recA Neisseria gonorrhoeae strain FA1090

61.027

87.105

0.532
  recA Neisseria gonorrhoeae MS11

61.027

87.105

0.532
  recA Neisseria gonorrhoeae MS11

61.027

87.105

0.532
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.542

87.368

0.529
  recA Ralstonia pseudosolanacearum GMI1000

59.337

87.368

0.518
  recA Pseudomonas stutzeri DSM 10701

56.484

91.316

0.516
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.704

87.105

0.503
  recA Helicobacter pylori 26695

56.364

86.842

0.489
  recA Helicobacter pylori strain NCTC11637

56.364

86.842

0.489

Multiple sequence alignment