Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   N597_RS08535 Genome accession   NC_022582
Coordinates   1805144..1806286 (-) Length   380 a.a.
NCBI ID   WP_023024706.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1800144..1811286
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N597_RS08500 (N597_08750) - 1800595..1801842 (-) 1248 WP_023024699.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  N597_RS08505 (N597_08755) - 1802163..1802474 (-) 312 WP_006595405.1 DUF1292 domain-containing protein -
  N597_RS08510 (N597_08760) ruvX 1802492..1802911 (-) 420 WP_023027379.1 Holliday junction resolvase RuvX -
  N597_RS08515 (N597_08765) - 1802911..1803177 (-) 267 WP_006597020.1 IreB family regulatory phosphoprotein -
  N597_RS08520 (N597_08770) - 1803319..1803870 (-) 552 WP_023024703.1 SP0191 family lipoprotein -
  N597_RS08525 (N597_08775) - 1803880..1804473 (-) 594 WP_023024705.1 SP0191 family lipoprotein -
  N597_RS08530 (N597_08780) spx 1804658..1805056 (-) 399 WP_006595399.1 transcriptional regulator Spx -
  N597_RS08535 (N597_08785) recA 1805144..1806286 (-) 1143 WP_023024706.1 recombinase RecA Machinery gene
  N597_RS08540 (N597_08790) cinA 1806407..1807675 (-) 1269 WP_023024708.1 competence/damage-inducible protein A Machinery gene
  N597_RS08545 (N597_08795) - 1808053..1809090 (+) 1038 WP_023024710.1 S66 peptidase family protein -
  N597_RS08550 (N597_08800) - 1809145..1809708 (-) 564 WP_023024712.1 DNA-3-methyladenine glycosylase I -
  N597_RS08555 (N597_08805) ruvA 1809718..1810311 (-) 594 WP_023024713.1 Holliday junction branch migration protein RuvA -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40890.53 Da        Isoelectric Point: 4.7230

>NTDB_id=62924 N597_RS08535 WP_023024706.1 1805144..1806286(-) (recA) [Streptococcus ilei]
MAKKQKKLDDISKKFGDEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTGELVKIATDLDIIQKAGAWYSYNGEKIGQGSE
NAKKFLADHPEIFDEIDHQVRVRFGLIDDDTAVVAQDEVAESPLLEEVTLDLDDAIEIEE

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=62924 N597_RS08535 WP_023024706.1 1805144..1806286(-) (recA) [Streptococcus ilei]
ATGGCGAAAAAACAGAAAAAATTAGATGATATCTCTAAGAAATTTGGAGATGAGCGTGAAAAAGCGCTCAATGATGCCCT
GAAGTTGATCGAAAAAGACTTTGGTAAGGGATCGATCATGCGTTTGGGGGAACGTGCAGAGCAAAAAGTACAAGTCATGA
GCTCTGGTTCCTTGGCGCTTGATATTGCCTTGGGTGCTGGTGGTTATCCAAAAGGTCGGATCATCGAAATCTATGGTCCA
GAATCATCTGGTAAAACAACCGTTGCCCTCCATGCAGTAGCGCAAGCACAGAAAGAAGGGGGCATTGCTGCCTTTATCGA
TGCCGAGCATGCCTTGGATCCATCTTATGCAGCAGCTCTTGGGGTCAATATCGACGAACTTCTCTTGTCTCAACCAGACT
CAGGGGAACAAGGACTTGAAATTGCTGGTAAATTGATCGACTCTGGTGCGGTTGATTTGGTGGTTGTCGACTCTGTTGCG
GCCTTGGTACCTCGTGCGGAAATCGATGGAGATATCGGGGATAGCCACGTTGGTTTGCAAGCGCGGATGATGAGCCAAGC
TATGCGTAAGCTTGGAGCTTCGATCAATAAGACCAAGACCATTGCCATCTTTATCAACCAATTGCGTGAAAAAGTTGGGG
TCATGTTTGGGAACCCTGAAACCACACCTGGTGGTCGTGCCCTGAAATTTTACGCTTCTGTCCGTCTAGATGTTCGTGGA
AATACTCAAATCAAGGGGACTGGGGACCAAAAAGATACCAACGTTGGTAAGGAAACCAAGATCAAGGTTGTGAAGAACAA
GGTAGCTCCACCGTTTAAAGAAGCCATGGTTGAAATCATGTACGGGGAAGGAATTTCACGTACAGGTGAATTGGTGAAGA
TTGCAACAGATTTGGATATCATCCAAAAAGCGGGTGCGTGGTACTCCTATAATGGCGAAAAAATTGGTCAAGGATCTGAA
AATGCTAAGAAATTCTTGGCTGACCATCCAGAAATTTTTGATGAGATTGACCACCAAGTGCGCGTGCGCTTCGGTTTGAT
CGATGATGACACTGCTGTAGTTGCACAAGATGAAGTAGCTGAAAGCCCACTTCTTGAAGAAGTAACACTAGATCTTGATG
ATGCCATTGAGATTGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

91.076

100

0.913
  recA Streptococcus mitis SK321

90.814

100

0.911
  recA Streptococcus pneumoniae Rx1

88.831

100

0.9
  recA Streptococcus pneumoniae D39

88.831

100

0.9
  recA Streptococcus pneumoniae R6

88.831

100

0.9
  recA Streptococcus pneumoniae TIGR4

88.831

100

0.9
  recA Streptococcus mutans UA159

85.53

100

0.871
  recA Streptococcus pyogenes NZ131

86.316

100

0.863
  recA Lactococcus lactis subsp. cremoris KW2

78.736

91.579

0.721
  recA Latilactobacillus sakei subsp. sakei 23K

70.181

87.368

0.613
  recA Bacillus subtilis subsp. subtilis str. 168

68.546

88.684

0.608
  recA Acinetobacter baylyi ADP1

59.829

92.368

0.553
  recA Acinetobacter baumannii D1279779

59.714

92.105

0.55
  recA Glaesserella parasuis strain SC1401

60.882

89.474

0.545
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.777

85

0.542
  recA Neisseria gonorrhoeae MS11

61.631

87.105

0.537
  recA Neisseria gonorrhoeae MS11

61.631

87.105

0.537
  recA Neisseria gonorrhoeae strain FA1090

61.631

87.105

0.537
  recA Vibrio cholerae strain A1552

62.462

85.526

0.534
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.462

85.526

0.534
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.843

87.368

0.532
  recA Ralstonia pseudosolanacearum GMI1000

59.337

87.368

0.518
  recA Pseudomonas stutzeri DSM 10701

56.851

90.263

0.513
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

87.105

0.511
  recA Helicobacter pylori strain NCTC11637

56.97

86.842

0.495
  recA Helicobacter pylori 26695

56.97

86.842

0.495

Multiple sequence alignment