Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   N597_RS08540 Genome accession   NC_022582
Coordinates   1806407..1807675 (-) Length   422 a.a.
NCBI ID   WP_023024708.1    Uniprot ID   -
Organism   Streptococcus ilei     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1801407..1812675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N597_RS08505 (N597_08755) - 1802163..1802474 (-) 312 WP_006595405.1 DUF1292 domain-containing protein -
  N597_RS08510 (N597_08760) ruvX 1802492..1802911 (-) 420 WP_023027379.1 Holliday junction resolvase RuvX -
  N597_RS08515 (N597_08765) - 1802911..1803177 (-) 267 WP_006597020.1 IreB family regulatory phosphoprotein -
  N597_RS08520 (N597_08770) - 1803319..1803870 (-) 552 WP_023024703.1 SP0191 family lipoprotein -
  N597_RS08525 (N597_08775) - 1803880..1804473 (-) 594 WP_023024705.1 SP0191 family lipoprotein -
  N597_RS08530 (N597_08780) spx 1804658..1805056 (-) 399 WP_006595399.1 transcriptional regulator Spx -
  N597_RS08535 (N597_08785) recA 1805144..1806286 (-) 1143 WP_023024706.1 recombinase RecA Machinery gene
  N597_RS08540 (N597_08790) cinA 1806407..1807675 (-) 1269 WP_023024708.1 competence/damage-inducible protein A Machinery gene
  N597_RS08545 (N597_08795) - 1808053..1809090 (+) 1038 WP_023024710.1 S66 peptidase family protein -
  N597_RS08550 (N597_08800) - 1809145..1809708 (-) 564 WP_023024712.1 DNA-3-methyladenine glycosylase I -
  N597_RS08555 (N597_08805) ruvA 1809718..1810311 (-) 594 WP_023024713.1 Holliday junction branch migration protein RuvA -
  N597_RS08560 (N597_08810) mutL 1810332..1812281 (-) 1950 WP_023024715.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45135.36 Da        Isoelectric Point: 4.8075

>NTDB_id=62925 N597_RS08540 WP_023024708.1 1806407..1807675(-) (cinA) [Streptococcus ilei]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLASLGIDVYYHVAVGDNEGRLLATIETASKRSDLVILCGGLGPTEDDLTKQT
LAKFLGKELVFDPTALAKLDTFFASRPDYVRTPNNERQAQMIAGSIPLQNRTGLAVGGLIEVDGVTYVVLPGPPSELKPM
VNEQLVPHLTTGEQLFSRVLRFFGIGESQLVTILADIIEEQSDPTVAPYAKTGEVTLRLSTKAKDQAEADAKLDILEKEI
LSRHTLDHQPLHELFYGYGDDNSMAKVAFDLLKRTGKTITAAESLTAGLFQATLADFSGASSIFAGGFVTYSLEEKSKML
SIPAQELEQHGVVSHFTAQAMASQARKLTGSDYGVSLTGVAGPDSLEGHPAGTVFIGLATPNGVDSVQVNIAGRSRADVR
EIAVLHAFNLVRLAVLNGENLV

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=62925 N597_RS08540 WP_023024708.1 1806407..1807675(-) (cinA) [Streptococcus ilei]
ATGAAGGCGGAAATTATTGCAGTTGGAACAGAAATTCTAACAGGACAAATTGTCAATACCAATGCCCAATTCTTGTCTGA
GAAATTAGCTAGTTTAGGGATTGATGTCTATTATCATGTGGCGGTAGGAGACAACGAAGGTCGTCTTTTAGCCACTATTG
AAACAGCTTCAAAACGCAGCGATTTGGTGATTTTATGCGGTGGACTTGGTCCAACAGAGGATGATTTGACCAAGCAAACC
CTTGCTAAGTTCTTAGGGAAAGAACTGGTTTTTGATCCGACAGCGCTTGCCAAACTCGACACCTTCTTTGCGAGTCGCCC
TGATTATGTCCGGACGCCCAATAATGAGCGACAAGCACAAATGATCGCTGGTTCAATCCCCCTTCAAAACCGTACAGGTC
TCGCGGTTGGAGGTTTGATTGAAGTCGACGGTGTGACCTATGTCGTTCTACCTGGTCCTCCAAGTGAGTTAAAACCCATG
GTTAATGAACAATTGGTGCCTCATTTGACAACAGGGGAGCAGCTCTTTTCAAGAGTTTTGCGCTTCTTTGGGATTGGGGA
AAGCCAGCTGGTTACGATCTTAGCCGACATCATTGAAGAGCAGAGTGATCCGACAGTGGCTCCTTATGCCAAGACAGGGG
AAGTGACCTTGCGTCTCTCTACAAAGGCGAAAGATCAGGCAGAAGCGGATGCTAAGCTCGATATCTTAGAAAAGGAAATC
TTATCACGCCATACCCTGGACCATCAACCCTTGCATGAACTGTTTTACGGTTATGGGGATGACAATTCGATGGCCAAGGT
GGCCTTTGATCTCTTGAAACGGACTGGTAAGACCATTACAGCTGCAGAAAGCCTGACGGCTGGCCTTTTCCAAGCGACTC
TGGCAGATTTTTCAGGGGCGTCCAGCATCTTTGCAGGTGGTTTTGTCACCTATAGTCTGGAAGAAAAAAGCAAGATGTTG
TCTATTCCAGCTCAAGAGTTAGAGCAACATGGAGTGGTGTCTCATTTTACAGCACAAGCCATGGCTTCACAGGCCCGTAA
GTTAACAGGATCCGATTATGGTGTTAGCCTGACCGGAGTTGCGGGGCCAGATAGTCTAGAAGGGCATCCAGCAGGGACTG
TCTTTATCGGACTTGCGACTCCAAATGGAGTAGATAGTGTCCAAGTCAATATCGCCGGACGTAGCCGGGCGGATGTCCGC
GAAATTGCAGTTCTTCATGCCTTTAATTTGGTACGCTTGGCTGTATTAAATGGTGAAAATTTGGTATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

75.3

98.815

0.744
  cinA Streptococcus mitis NCTC 12261

75.3

98.815

0.744
  cinA Streptococcus pneumoniae TIGR4

74.341

98.815

0.735
  cinA Streptococcus pneumoniae Rx1

74.341

98.815

0.735
  cinA Streptococcus pneumoniae R6

74.341

98.815

0.735
  cinA Streptococcus pneumoniae D39

74.101

98.815

0.732
  cinA Streptococcus mutans UA159

70.922

100

0.711
  cinA Streptococcus suis isolate S10

55.932

97.867

0.547
  cinA Bacillus subtilis subsp. subtilis str. 168

47.711

98.341

0.469

Multiple sequence alignment