Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   LOK74_RS06855 Genome accession   NZ_CP087263
Coordinates   1378075..1379133 (+) Length   352 a.a.
NCBI ID   WP_277613427.1    Uniprot ID   -
Organism   Brevibacillus humidisoli strain MMS20-4M-10-Y     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1373075..1384133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOK74_RS06835 (LOK74_06835) rimO 1373085..1374428 (+) 1344 WP_230045903.1 30S ribosomal protein S12 methylthiotransferase RimO -
  LOK74_RS06840 (LOK74_06840) pgsA 1374429..1375004 (+) 576 WP_230045904.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LOK74_RS06845 (LOK74_06845) cinA 1375091..1376332 (+) 1242 WP_230045905.1 competence/damage-inducible protein A Machinery gene
  LOK74_RS06850 (LOK74_06850) - 1376338..1377927 (+) 1590 WP_230045906.1 DEAD/DEAH box helicase -
  LOK74_RS06855 (LOK74_06855) recA 1378075..1379133 (+) 1059 WP_277613427.1 recombinase RecA Machinery gene
  LOK74_RS06860 (LOK74_06860) - 1379211..1379870 (+) 660 WP_230045907.1 RecX family transcriptional regulator -
  LOK74_RS06865 (LOK74_06865) rny 1380272..1381777 (+) 1506 WP_230046930.1 ribonuclease Y -
  LOK74_RS06870 (LOK74_06870) - 1381929..1382723 (+) 795 WP_230046931.1 TIGR00282 family metallophosphoesterase -
  LOK74_RS06875 (LOK74_06875) spoVS 1382841..1383101 (+) 261 WP_003385776.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37805.05 Da        Isoelectric Point: 4.8344

>NTDB_id=628183 LOK74_RS06855 WP_277613427.1 1378075..1379133(+) (recA) [Brevibacillus humidisoli strain MMS20-4M-10-Y]
MSDRRAALENALRQIEKQFGKGSIMKLGDMAATQVSTVSSGALALDIALGVGGFPRGRIIEIYGPESSGKTTVALHAIAE
AQKQGGQAAFIDAEHALDPVYAAKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRKAESIKVGNDVVGTKT
KVKVVKNKVAPPFKTAEVDIMYGEGISKEGSILDIGTEIDVVVKSGAWYSFSDERLGQGRENAKMFLKENPEISKQIEEK
IREYYSLNSNSVPAGEAVNDPEQDEEPVFDFE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=628183 LOK74_RS06855 WP_277613427.1 1378075..1379133(+) (recA) [Brevibacillus humidisoli strain MMS20-4M-10-Y]
TTGTCCGATCGTCGCGCTGCTTTAGAAAACGCATTACGACAAATCGAAAAACAATTCGGGAAAGGCTCCATCATGAAGCT
TGGAGATATGGCTGCAACGCAGGTTTCAACTGTGTCGAGCGGTGCGCTGGCGCTTGATATCGCGCTTGGCGTCGGCGGTT
TCCCTCGTGGACGTATCATAGAGATCTACGGACCTGAGTCTTCCGGTAAGACCACAGTTGCCTTGCATGCGATTGCCGAA
GCCCAGAAGCAGGGAGGACAAGCAGCCTTTATCGACGCTGAGCACGCACTGGATCCAGTATATGCTGCAAAGCTTGGCGT
CAATATTGAGGAGTTGCTGCTGTCCCAGCCTGATACGGGAGAGCAGGCACTGGAGATTGCGGAGGCGCTGGTGCGCTCCG
GAGCGGTCGACATTATCGTCATCGACTCGGTGGCCGCGTTGGTGCCGAAGGCGGAGATTGAGGGTGAGATGGGCGATTCT
CACGTCGGTCTGCAGGCTCGCTTGATGTCGCAGGCGCTGCGCAAGCTGTCAGGGGCTATCAACAAGTCGAAGACGATTGC
CATCTTCATCAACCAACTGCGTGAAAAAGTTGGTGTCATGTTTGGAAATCCAGAGACTACCCCAGGTGGGCGTGCACTGA
AGTTCTACGCCAGTGTTCGTCTTGATGTTCGCAAGGCAGAGAGCATCAAGGTGGGAAATGATGTGGTCGGTACCAAAACC
AAGGTAAAAGTAGTGAAAAACAAGGTGGCTCCTCCGTTCAAGACAGCGGAAGTGGATATTATGTACGGGGAAGGGATCTC
CAAGGAAGGAAGCATTCTCGATATTGGGACCGAGATTGACGTGGTGGTCAAAAGCGGCGCATGGTATTCGTTTAGCGACG
AACGACTCGGTCAGGGACGGGAGAACGCCAAAATGTTCCTGAAGGAAAATCCGGAAATCTCCAAACAAATTGAAGAGAAG
ATCCGTGAGTATTACAGCCTGAATTCGAATTCGGTTCCCGCGGGGGAAGCGGTGAATGATCCCGAACAGGATGAGGAGCC
GGTCTTTGACTTTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

83.133

94.318

0.784
  recA Streptococcus mitis NCTC 12261

67.139

100

0.673
  recA Latilactobacillus sakei subsp. sakei 23K

71.472

92.614

0.662
  recA Streptococcus pneumoniae R6

70.303

93.75

0.659
  recA Streptococcus pneumoniae Rx1

70.303

93.75

0.659
  recA Streptococcus pneumoniae D39

70.303

93.75

0.659
  recA Streptococcus pneumoniae TIGR4

70.303

93.75

0.659
  recA Streptococcus mitis SK321

70

93.75

0.656
  recA Lactococcus lactis subsp. cremoris KW2

67.365

94.886

0.639
  recA Streptococcus pyogenes NZ131

69.136

92.045

0.636
  recA Streptococcus mutans UA159

68.085

93.466

0.636
  recA Ralstonia pseudosolanacearum GMI1000

67.169

94.318

0.634
  recA Glaesserella parasuis strain SC1401

61.782

98.864

0.611
  recA Neisseria gonorrhoeae MS11

63.881

95.17

0.608
  recA Neisseria gonorrhoeae MS11

63.881

95.17

0.608
  recA Neisseria gonorrhoeae strain FA1090

63.881

95.17

0.608
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.355

91.193

0.605
  recA Vibrio cholerae strain A1552

66.355

91.193

0.605
  recA Acinetobacter baylyi ADP1

60.345

98.864

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.22

92.898

0.597
  recA Pseudomonas stutzeri DSM 10701

60.933

97.443

0.594
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.551

91.193

0.58
  recA Acinetobacter baumannii D1279779

63.551

91.193

0.58
  recA Helicobacter pylori 26695

60.843

94.318

0.574
  recA Helicobacter pylori strain NCTC11637

60.542

94.318

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

90.909

0.568